Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 AC137950.2-201ENSMUST00000227127 1089 ntBASIC12.93□□□□□ -0.34
Rfx1P48377 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Rfx1P48377 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Rfx1P48377 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Rfx1P48377 Gm7551-201ENSMUST00000089593 1074 ntBASIC12.93□□□□□ -0.34
Rfx1P48377 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Rfx1P48377 Dip2c-202ENSMUST00000169960 4801 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Kif4-201ENSMUST00000048962 4983 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Rrm2b-201ENSMUST00000022901 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Rfx1P48377 Ctsa-201ENSMUST00000017904 3674 ntAPPRIS P4 TSL 5 BASIC12.93□□□□□ -0.34
Rfx1P48377 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Man2c1-211ENSMUST00000160147 3820 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Gm14667-201ENSMUST00000119448 1350 ntBASIC12.93□□□□□ -0.34
Rfx1P48377 Ndrg4-202ENSMUST00000073139 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Rfx1P48377 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Rfx1P48377 Eif2s3y-201ENSMUST00000091197 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Amph-201ENSMUST00000003345 3367 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Sf3b5-201ENSMUST00000105139 3841 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Rfx1P48377 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Gfra2-203ENSMUST00000227697 1323 ntBASIC12.92□□□□□ -0.34
Rfx1P48377 Zbtb25-202ENSMUST00000176102 2707 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Stra6-213ENSMUST00000167479 2871 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Rfx1P48377 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC12.92□□□□□ -0.34
Rfx1P48377 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Gm17040-202ENSMUST00000170597 889 ntBASIC12.92□□□□□ -0.34
Rfx1P48377 Gm16982-201ENSMUST00000181275 2620 ntTSL 2 BASIC12.92□□□□□ -0.34
Rfx1P48377 Gm28722-201ENSMUST00000187630 1036 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Gm37981-201ENSMUST00000194280 535 ntBASIC12.92□□□□□ -0.34
Rfx1P48377 Gm43371-201ENSMUST00000202838 1031 ntBASIC12.92□□□□□ -0.34
Rfx1P48377 Gm36028-202ENSMUST00000205931 1161 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 AC153370.2-201ENSMUST00000217920 3093 ntTSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC12.92□□□□□ -0.34
Rfx1P48377 CT030170.2-201ENSMUST00000223267 126 ntBASIC12.92□□□□□ -0.34
Rfx1P48377 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Olfr1212-201ENSMUST00000055895 936 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Rfx1P48377 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Anks1b-203ENSMUST00000099368 2799 ntTSL 5 BASIC12.92□□□□□ -0.34
Rfx1P48377 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Prkd3-204ENSMUST00000119284 4743 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Rfx1P48377 Gm7168-201ENSMUST00000088809 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Rnf43-202ENSMUST00000092800 4037 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 9130019O22Rik-201ENSMUST00000049052 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Hmgcr-201ENSMUST00000022176 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 AC153498.1-201ENSMUST00000219775 2722 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 Trim34a-201ENSMUST00000060315 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Lrrn4cl-201ENSMUST00000096257 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 AC154220.1-201ENSMUST00000225033 1705 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 Rere-202ENSMUST00000105682 7728 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Rfx1P48377 Exoc7-201ENSMUST00000021147 3337 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Spata31d1a-201ENSMUST00000066510 4261 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm45124-201ENSMUST00000206723 2755 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 Zfp7-201ENSMUST00000023179 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 AI606181-201ENSMUST00000099454 2796 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Rfx1P48377 D630003M21Rik-202ENSMUST00000103121 4521 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Slc16a7-202ENSMUST00000105257 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm12266-201ENSMUST00000120311 962 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 Gm13328-201ENSMUST00000120816 1020 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 Gm11450-201ENSMUST00000121144 333 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Rpf2-206ENSMUST00000183309 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm7255-201ENSMUST00000187371 908 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 AU022133-201ENSMUST00000200601 873 ntBASIC12.91□□□□□ -0.34
Rfx1P48377 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 Gm32939-201ENSMUST00000222336 843 ntTSL 3 BASIC12.91□□□□□ -0.34
Rfx1P48377 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Gemin6-201ENSMUST00000069486 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Vmn1r34-201ENSMUST00000074381 930 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Rfx1P48377 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Rfx1P48377 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Rfx1P48377 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Rfx1P48377 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms