Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Gm5641-201ENSMUST00000091130 1488 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Gm14592-201ENSMUST00000117201 560 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm11380-201ENSMUST00000118067 560 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm11578-201ENSMUST00000118530 459 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm13039-201ENSMUST00000118638 794 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC12.62□□□□□ -0.39
Traf1P39428 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC12.62□□□□□ -0.39
Traf1P39428 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC12.62□□□□□ -0.39
Traf1P39428 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Gm23400-201ENSMUST00000174994 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm26463-201ENSMUST00000175065 101 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm24332-201ENSMUST00000175102 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm25959-201ENSMUST00000175112 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm22475-201ENSMUST00000175169 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm22903-201ENSMUST00000175193 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm25070-201ENSMUST00000175237 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm24159-201ENSMUST00000175264 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm25299-201ENSMUST00000175283 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm23798-201ENSMUST00000175560 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm23802-201ENSMUST00000175565 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm25708-201ENSMUST00000177687 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm24370-201ENSMUST00000178007 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm23049-201ENSMUST00000178068 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm28019-201ENSMUST00000178138 101 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm25571-201ENSMUST00000178322 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm25355-201ENSMUST00000178456 101 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm24975-201ENSMUST00000178492 101 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm23189-201ENSMUST00000178954 102 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm25100-201ENSMUST00000179750 101 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm23064-201ENSMUST00000179866 101 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm18014-201ENSMUST00000183369 817 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm20781-201ENSMUST00000193154 693 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Ighv1-2-201ENSMUST00000195325 378 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm21736-201ENSMUST00000195399 693 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Gm6352-201ENSMUST00000203583 1134 ntBASIC12.62□□□□□ -0.39
Traf1P39428 AC102569.1-201ENSMUST00000221563 685 ntBASIC12.62□□□□□ -0.39
Traf1P39428 AC154407.1-201ENSMUST00000226777 526 ntBASIC12.62□□□□□ -0.39
Traf1P39428 AC137871.1-201ENSMUST00000228278 475 ntBASIC12.62□□□□□ -0.39
Traf1P39428 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Traf1P39428 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC12.62□□□□□ -0.39
Traf1P39428 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Traf1P39428 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Traf1P39428 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Mir6941-201ENSMUST00000184711 59 ntBASIC12.61□□□□□ -0.39
Traf1P39428 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Gm6439-201ENSMUST00000199849 862 ntBASIC12.61□□□□□ -0.39
Traf1P39428 Gm33080-201ENSMUST00000205429 172 ntBASIC12.61□□□□□ -0.39
Traf1P39428 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Traf1P39428 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC12.61□□□□□ -0.39
Traf1P39428 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Traf1P39428 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Traf1P39428 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
Traf1P39428 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Traf1P39428 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Nfyc-204ENSMUST00000120779 2006 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Traf1P39428 AC153380.1-201ENSMUST00000214959 2364 ntBASIC12.61□□□□□ -0.39
Traf1P39428 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Traf1P39428 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Traf1P39428 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Traf1P39428 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms