Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Mir1982-201ENSMUST00000157368 74 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm2991-201ENSMUST00000173338 480 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC8.92□□□□□ -0.98
Hmgb3O54879 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm38151-201ENSMUST00000195085 289 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm44651-201ENSMUST00000207343 372 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm18935-201ENSMUST00000212692 664 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 CT025533.2-201ENSMUST00000228715 1248 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Rasal1-205ENSMUST00000156722 3251 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Tmem150c-201ENSMUST00000063192 3084 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Npc1l1-201ENSMUST00000004505 4467 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Ctsa-202ENSMUST00000103092 3646 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Pdpr-201ENSMUST00000039333 4938 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 5830462I19Rik-201ENSMUST00000168137 3383 ntBASIC8.92□□□□□ -0.98
Hmgb3O54879 Hivep2-201ENSMUST00000015645 9763 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Gpm6b-207ENSMUST00000112229 3203 ntAPPRIS ALT1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Kctd7-201ENSMUST00000040616 4291 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Pds5a-201ENSMUST00000031104 4146 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Efna5-201ENSMUST00000076840 4032 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Rdh11-201ENSMUST00000085254 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 0610030E20Rik-201ENSMUST00000077783 4605 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Pip5k1a-201ENSMUST00000005768 3480 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm13140-201ENSMUST00000119840 3151 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm7598-201ENSMUST00000130251 3123 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm23061-201ENSMUST00000102348 116 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm25226-201ENSMUST00000158198 123 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm8343-201ENSMUST00000182705 994 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm27572-201ENSMUST00000183702 255 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm43184-201ENSMUST00000197247 542 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm45856-201ENSMUST00000212752 416 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 AC122891.1-201ENSMUST00000218671 268 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 CT485787.1-201ENSMUST00000225617 968 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 AC159002.1-201ENSMUST00000226714 924 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Boc-201ENSMUST00000114634 4451 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Anks1b-210ENSMUST00000182113 3553 ntTSL 5 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Ptpn13-201ENSMUST00000048957 7915 ntAPPRIS P1 TSL 2 BASIC8.91□□□□□ -0.98
Hmgb3O54879 Osgep-202ENSMUST00000159292 3388 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Galnt16-201ENSMUST00000021558 3922 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm43307-201ENSMUST00000199465 2371 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 Gm9129-201ENSMUST00000218173 1689 ntBASIC8.91□□□□□ -0.98
Hmgb3O54879 R3hdm2-218ENSMUST00000170336 3639 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Tulp4-209ENSMUST00000149756 8784 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Hmgb3O54879 Slc10a7-202ENSMUST00000209490 3485 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Bsdc1-201ENSMUST00000048162 2823 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm10425-201ENSMUST00000181085 3364 ntTSL 2 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Xlr4c-201ENSMUST00000068551 1500 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Dram2-202ENSMUST00000067630 3271 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Slc1a2-204ENSMUST00000111213 2093 ntTSL 5 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Adamts4-202ENSMUST00000111315 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Tank-203ENSMUST00000112495 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm5171-201ENSMUST00000214944 1415 ntBASIC8.9□□□□□ -0.98
Hmgb3O54879 Gpm6b-206ENSMUST00000112228 3083 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Vmn2r18-201ENSMUST00000165928 2367 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Pml-201ENSMUST00000085673 4481 ntAPPRIS P4 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Myc-206ENSMUST00000167731 1821 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Nemp2-201ENSMUST00000165859 3396 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm11222-201ENSMUST00000119005 738 ntBASIC8.9□□□□□ -0.98
Hmgb3O54879 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
Hmgb3O54879 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hmgb3O54879 Gm5745-201ENSMUST00000183748 313 ntBASIC8.9□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms