Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm7627-201ENSMUST00000183205 999 ntBASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Mir6953-201ENSMUST00000184745 68 ntBASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm28746-201ENSMUST00000187453 380 ntBASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm5865-201ENSMUST00000198713 637 ntBASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm42689-201ENSMUST00000202403 404 ntBASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm44420-201ENSMUST00000203669 490 ntBASIC14.88□□□□□ -0.03
Usp40Q8BWR4 AC161172.1-201ENSMUST00000227801 486 ntBASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Mptx1-201ENSMUST00000027816 799 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm8122-201ENSMUST00000165988 1404 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
Usp40Q8BWR4 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Il33-201ENSMUST00000025724 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Ano4-202ENSMUST00000181976 1410 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm8873-201ENSMUST00000217847 1439 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm15258-201ENSMUST00000153801 741 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Fbxo16-201ENSMUST00000169656 1019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 1700019D03Rik-207ENSMUST00000191441 638 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm42710-201ENSMUST00000200608 985 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm6518-201ENSMUST00000208450 342 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 AC154759.1-201ENSMUST00000224137 1159 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Ggta1-201ENSMUST00000044255 1221 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm5278-201ENSMUST00000055957 552 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm8894-201ENSMUST00000074642 666 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Myc-204ENSMUST00000160009 1765 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Cdca8-202ENSMUST00000084296 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm42941-201ENSMUST00000200347 1321 ntBASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Hspa2-201ENSMUST00000080449 2524 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Usp40Q8BWR4 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Prim2-201ENSMUST00000027312 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Mir291b-201ENSMUST00000104838 79 ntBASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Olfr1372-ps1-201ENSMUST00000121007 934 ntBASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 AC129217.1-201ENSMUST00000225181 642 ntBASIC14.86□□□□□ -0.03
Usp40Q8BWR4 CT010505.2-201ENSMUST00000227918 998 ntBASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Magoh-201ENSMUST00000030348 692 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Atp6v1e2-201ENSMUST00000065758 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Usp40Q8BWR4 AC154354.1-203ENSMUST00000225565 1364 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Hyal2-206ENSMUST00000195681 2968 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Gm42971-201ENSMUST00000199228 2079 ntBASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Usp40Q8BWR4 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms