Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Kyat1-203ENSMUST00000113660 1388 ntTSL 5 BASIC16.48■□□□□ 0.23
Cux1P53564 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Igsf5-201ENSMUST00000000163 1851 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Faf2-201ENSMUST00000026991 1748 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Cux1P53564 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Tnnt3-203ENSMUST00000105941 747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Tnnt3-204ENSMUST00000105942 720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Tnnt3-205ENSMUST00000105943 720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Tnnt3-207ENSMUST00000105945 747 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Tnnt3-208ENSMUST00000105946 765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Gm11771-201ENSMUST00000118124 732 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Gm15132-201ENSMUST00000118581 652 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Zfp738-202ENSMUST00000125495 712 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Gm23081-201ENSMUST00000157845 297 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Gm5873-201ENSMUST00000177157 1066 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Gm17514-201ENSMUST00000181863 1102 ntTSL 5 BASIC16.48■□□□□ 0.23
Cux1P53564 Mir6396-201ENSMUST00000183603 111 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Gm30652-201ENSMUST00000199103 430 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Rassf6-205ENSMUST00000202704 1178 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
Cux1P53564 Gm7319-201ENSMUST00000210047 778 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Gm18391-201ENSMUST00000217189 658 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Gm40689-201ENSMUST00000218006 362 ntTSL 5 BASIC16.48■□□□□ 0.23
Cux1P53564 Ttc7b-206ENSMUST00000223020 3307 ntTSL 5 BASIC16.48■□□□□ 0.23
Cux1P53564 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Plrg1-204ENSMUST00000150268 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Gm45743-201ENSMUST00000212701 2795 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Gm21142-201ENSMUST00000179999 2604 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Cux1P53564 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 5930420M18Rik-201ENSMUST00000202893 2281 ntBASIC16.47■□□□□ 0.23
Cux1P53564 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Cux1P53564 Gm24368-201ENSMUST00000175388 106 ntBASIC16.47■□□□□ 0.23
Cux1P53564 2700099C18Rik-203ENSMUST00000182475 969 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Gm3945-201ENSMUST00000196637 683 ntBASIC16.47■□□□□ 0.23
Cux1P53564 Fxyd1-214ENSMUST00000206328 545 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
Cux1P53564 Gm18124-201ENSMUST00000210695 706 ntBASIC16.47■□□□□ 0.23
Cux1P53564 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 2010109A12Rik-201ENSMUST00000031330 549 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Gm9869-201ENSMUST00000063858 375 ntTSL 5 BASIC16.47■□□□□ 0.23
Cux1P53564 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Rdh11-201ENSMUST00000085254 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC16.47■□□□□ 0.23
Cux1P53564 Gm42449-201ENSMUST00000200349 2258 ntBASIC16.47■□□□□ 0.23
Cux1P53564 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC16.47■□□□□ 0.23
Cux1P53564 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Gm11497-201ENSMUST00000138295 2154 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Myc-208ENSMUST00000191178 1362 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cux1P53564 Gm12097-201ENSMUST00000121523 1414 ntBASIC16.46■□□□□ 0.23
Cux1P53564 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Xaf1-204ENSMUST00000146233 2597 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Cux1P53564 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC16.46■□□□□ 0.23
Cux1P53564 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Cux1P53564 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Cux1P53564 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Morf4l2-213ENSMUST00000166478 1720 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Cux1P53564 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Cux1P53564 Gm3880-201ENSMUST00000122154 337 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Cux1P53564 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC16.46■□□□□ 0.23
Cux1P53564 4930538E20Rik-201ENSMUST00000131383 546 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Glrx2-206ENSMUST00000145969 924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 1700001J04Rik-202ENSMUST00000154037 743 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Osgep-207ENSMUST00000162177 1219 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Ccr6-204ENSMUST00000167956 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 E330020D12Rik-203ENSMUST00000188717 766 ntTSL 2 BASIC16.46■□□□□ 0.23
Cux1P53564 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Cux1P53564 Gm8848-201ENSMUST00000197270 1343 ntBASIC16.46■□□□□ 0.23
Cux1P53564 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Gm21939-201ENSMUST00000221137 2773 ntBASIC16.46■□□□□ 0.23
Cux1P53564 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC16.46■□□□□ 0.23
Cux1P53564 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Matr3-216ENSMUST00000190653 1846 ntTSL 5 BASIC16.46■□□□□ 0.23
Cux1P53564 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Cux1P53564 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cux1P53564 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC16.46■□□□□ 0.23
Cux1P53564 Gm10344-201ENSMUST00000193498 1419 ntBASIC16.46■□□□□ 0.23
Cux1P53564 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC16.46■□□□□ 0.23
Cux1P53564 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cux1P53564 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Cux1P53564 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC16.46■□□□□ 0.22
Cux1P53564 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cux1P53564 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
Cux1P53564 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Cfap74-204ENSMUST00000123952 2365 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Gm12489-201ENSMUST00000119364 148 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm16283-201ENSMUST00000149935 522 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms