Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm11573-201ENSMUST00000119956 394 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Mir1896-201ENSMUST00000122641 81 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm15489-201ENSMUST00000132811 973 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm13660-201ENSMUST00000142828 722 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm37141-201ENSMUST00000191938 422 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Ighv5-12-4-201ENSMUST00000195381 353 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm19566-201ENSMUST00000199576 610 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Fut1-202ENSMUST00000209379 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm18391-201ENSMUST00000217189 658 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 CT030011.1-201ENSMUST00000221959 264 ntTSL 5 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 CAAA01139602.1-201ENSMUST00000222545 283 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 AC129217.1-201ENSMUST00000225181 642 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 AC165260.2-201ENSMUST00000225371 395 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 AC154683.1-201ENSMUST00000228409 1284 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm5424-201ENSMUST00000053865 1240 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm39464-201ENSMUST00000214091 2169 ntTSL 5 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Bzw2-201ENSMUST00000020856 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Oprm1-213ENSMUST00000105604 1616 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm14639-201ENSMUST00000120850 866 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm14829-201ENSMUST00000121499 1138 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm13842-202ENSMUST00000156331 865 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Vmn2r-ps13-201ENSMUST00000176920 606 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm42859-201ENSMUST00000199572 193 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm44236-201ENSMUST00000204492 513 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm44917-201ENSMUST00000208798 520 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 AC153379.1-201ENSMUST00000218174 485 ntTSL 3 BASIC12.74□□□□□ -0.37
Scn11aQ9R053 AY761184-201ENSMUST00000071886 503 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Gm23458-201ENSMUST00000083257 169 ntBASIC12.74□□□□□ -0.37
Scn11aQ9R053 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Scn11aQ9R053 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm44443-201ENSMUST00000204396 5633 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm10646-201ENSMUST00000213227 3293 ntTSL 2 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm38246-201ENSMUST00000194318 1511 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Acvr1-203ENSMUST00000112599 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm38034-201ENSMUST00000193915 2069 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Tulp2-203ENSMUST00000107758 1597 ntTSL 5 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Nxpe1-ps-201ENSMUST00000209981 1454 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm44975-201ENSMUST00000207435 1390 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm23061-201ENSMUST00000102348 116 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Dpm1-202ENSMUST00000109193 1076 ntTSL 5 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm13505-201ENSMUST00000121666 817 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 H2al1e-201ENSMUST00000178979 494 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 H2al1b-201ENSMUST00000189531 495 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm32111-201ENSMUST00000207689 846 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 AC134913.2-201ENSMUST00000225017 771 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 AC159006.3-201ENSMUST00000226918 664 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Rpl22l1-201ENSMUST00000043867 552 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Tdpoz4-201ENSMUST00000075953 1113 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm21142-201ENSMUST00000179999 2604 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Scn11aQ9R053 Cog3-203ENSMUST00000227473 4197 ntBASIC12.73□□□□□ -0.37
Scn11aQ9R053 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Nr1h4-201ENSMUST00000058126 1964 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Scn11aQ9R053 Bgn-207ENSMUST00000169489 1574 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms