Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Gfra2-203ENSMUST00000227697 1323 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Tcl1b4-202ENSMUST00000222867 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Olfr1156-202ENSMUST00000216191 3300 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Cdx2P43241 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
Cdx2P43241 Ndufb5-202ENSMUST00000121778 574 ntTSL 3 BASIC10.38□□□□□ -0.75
Cdx2P43241 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC10.38□□□□□ -0.75
Cdx2P43241 Gm6686-201ENSMUST00000178455 258 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Gm40414-201ENSMUST00000197608 481 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 Gm45310-201ENSMUST00000210436 275 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 AC133517.1-201ENSMUST00000225825 594 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 AC118639.1-202ENSMUST00000226957 653 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 CT025679.1-201ENSMUST00000227106 449 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Cdx2P43241 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Cdx2P43241 Gm22341-201ENSMUST00000083775 129 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Cdx2P43241 4930517J16Rik-201ENSMUST00000193095 1568 ntBASIC10.38□□□□□ -0.75
Cdx2P43241 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Gm31138-201ENSMUST00000212296 1705 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx2P43241 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
Cdx2P43241 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC10.37□□□□□ -0.75
Cdx2P43241 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC10.37□□□□□ -0.75
Cdx2P43241 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Lyrm1-202ENSMUST00000106516 1069 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC10.37□□□□□ -0.75
Cdx2P43241 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Gm4778-202ENSMUST00000159517 1241 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Cdx2P43241 Gm16228-201ENSMUST00000162286 809 ntBASIC10.37□□□□□ -0.75
Cdx2P43241 Gm8094-201ENSMUST00000165136 1408 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Cdx2P43241 Gm28032-201ENSMUST00000184104 96 ntBASIC10.37□□□□□ -0.75
Cdx2P43241 Gm38038-201ENSMUST00000193803 259 ntBASIC10.37□□□□□ -0.75
Cdx2P43241 Gm43866-201ENSMUST00000203894 839 ntBASIC10.37□□□□□ -0.75
Cdx2P43241 AC134537.1-201ENSMUST00000219205 265 ntBASIC10.37□□□□□ -0.75
Cdx2P43241 Gm7242-201ENSMUST00000221134 705 ntBASIC10.37□□□□□ -0.75
Cdx2P43241 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Cdx2P43241 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC10.37□□□□□ -0.75
Cdx2P43241 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Cdx2P43241 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Ppid-201ENSMUST00000029382 1752 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx2P43241 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC10.36□□□□□ -0.75
Cdx2P43241 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC10.36□□□□□ -0.75
Cdx2P43241 Gm8725-201ENSMUST00000221829 1333 ntBASIC10.36□□□□□ -0.75
Cdx2P43241 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Nrf1-201ENSMUST00000004761 1589 ntTSL 5 BASIC10.36□□□□□ -0.75
Cdx2P43241 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Cdx2P43241 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Cdx2P43241 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC10.36□□□□□ -0.75
Cdx2P43241 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
Cdx2P43241 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx2P43241 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC10.36□□□□□ -0.75
Cdx2P43241 Gm13286-201ENSMUST00000117750 537 ntBASIC10.36□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms