Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm26594-201ENSMUST00000180383 1094 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm29611-201ENSMUST00000186132 1011 ntTSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm21394-202ENSMUST00000189463 1223 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm20806-202ENSMUST00000190349 1223 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm42723-201ENSMUST00000199966 1044 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm44137-201ENSMUST00000203670 367 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm31135-202ENSMUST00000208946 1155 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm10752-201ENSMUST00000218348 729 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
Hoxd3P09027 AC154552.3-201ENSMUST00000220741 444 ntTSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 AC124687.2-201ENSMUST00000221927 1228 ntTSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 CT573047.1-201ENSMUST00000223652 851 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Vmn1r2-202ENSMUST00000226198 1126 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Mup4-201ENSMUST00000075973 922 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm10354-201ENSMUST00000096953 1215 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm44190-201ENSMUST00000205083 1401 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm43221-201ENSMUST00000197612 2071 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Snrpb2-201ENSMUST00000008477 2061 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm38194-201ENSMUST00000194529 2211 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
Hoxd3P09027 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm21358-201ENSMUST00000191645 1659 ntBASIC8.85□□□□□ -0.99
Hoxd3P09027 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm37057-201ENSMUST00000192624 1916 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Mapkbp1-201ENSMUST00000066058 6942 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Rhox3f-201ENSMUST00000115172 833 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm12697-201ENSMUST00000118008 667 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Rhox3g-201ENSMUST00000119965 991 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm13438-201ENSMUST00000120100 573 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm6542-201ENSMUST00000153606 772 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Vmn2r-ps118-201ENSMUST00000176785 908 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Rhox3f-203ENSMUST00000184451 1008 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Sh2d1a-207ENSMUST00000189753 1223 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm7891-201ENSMUST00000190284 843 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 4930433B08Rik-201ENSMUST00000192010 644 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm38047-201ENSMUST00000193690 1133 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm18492-201ENSMUST00000198141 1018 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm42657-201ENSMUST00000201746 211 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm17825-201ENSMUST00000206836 794 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm44585-201ENSMUST00000207150 607 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm7600-201ENSMUST00000209657 785 ntBASIC8.84□□□□□ -0.99
Hoxd3P09027 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC8.84□□□□□ -0.99
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms