Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gm13777-201ENSMUST00000118208 345 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gm12847-201ENSMUST00000156219 413 ntTSL 5 BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gm17799-201ENSMUST00000183270 667 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gm7255-201ENSMUST00000187371 908 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gm43997-201ENSMUST00000203986 1005 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gm45090-201ENSMUST00000208775 1148 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 AC161172.1-201ENSMUST00000227801 486 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Klk1b22-201ENSMUST00000077528 855 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Lgals9-203ENSMUST00000108269 1586 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Atf3-203ENSMUST00000195117 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 AC154197.1-201ENSMUST00000225136 1382 ntBASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 Klk1b26-201ENSMUST00000048945 1386 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx55Q6ZPL9 AC131081.1-201ENSMUST00000219535 1736 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm37264-201ENSMUST00000194916 2192 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Psme2-201ENSMUST00000111378 795 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Rps23-ps1-201ENSMUST00000116115 425 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm12435-201ENSMUST00000118949 1016 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm12345-201ENSMUST00000119288 898 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm15341-201ENSMUST00000137315 592 ntTSL 3 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Rps23-ps2-201ENSMUST00000146939 432 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm22876-201ENSMUST00000175450 298 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm38007-201ENSMUST00000192187 313 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Fut1-202ENSMUST00000209379 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm35239-201ENSMUST00000218346 487 ntTSL 3 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 AC124356.1-201ENSMUST00000221469 698 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm8420-201ENSMUST00000097103 598 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Gm5697-201ENSMUST00000122295 2482 ntBASIC12.42□□□□□ -0.42
Ddx55Q6ZPL9 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm29101-201ENSMUST00000188329 1471 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Amd-ps3-201ENSMUST00000072796 1496 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Galntl5-201ENSMUST00000030778 1627 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Cdca8-202ENSMUST00000084296 1626 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Mir598-201ENSMUST00000102094 79 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Mir291b-201ENSMUST00000104838 79 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm11540-201ENSMUST00000117457 780 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm14633-201ENSMUST00000121152 470 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm6425-201ENSMUST00000136332 790 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Ttc39b-206ENSMUST00000148811 727 ntTSL 3 BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm16080-201ENSMUST00000152128 692 ntTSL 3 BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm24074-201ENSMUST00000158178 260 ntBASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gast-201ENSMUST00000017309 460 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Mok-204ENSMUST00000177224 551 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC12.41□□□□□ -0.42
Ddx55Q6ZPL9 Gm17733-201ENSMUST00000181883 1048 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms