Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm26822-201ENSMUST00000181732 3374 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm11783-201ENSMUST00000119549 885 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm8876-201ENSMUST00000120768 1122 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm4879-201ENSMUST00000122190 1272 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Rn7s6-201ENSMUST00000175005 291 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm42726-201ENSMUST00000202274 1286 ntTSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm3793-201ENSMUST00000204973 672 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm3028-201ENSMUST00000213805 1119 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 AC166341.2-201ENSMUST00000220571 120 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Ccdc62-202ENSMUST00000165148 3920 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Ppp4r1l-ps-202ENSMUST00000132669 2767 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Hyal2-206ENSMUST00000195681 2968 ntBASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 4930488L21Rik-202ENSMUST00000212638 3164 ntTSL 5 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC11.12□□□□□ -0.63
Sh3rf1Q69ZI1 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Oprm1-204ENSMUST00000063036 1427 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Ankub1-202ENSMUST00000197088 1854 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm26013-201ENSMUST00000104404 119 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm22711-201ENSMUST00000116890 133 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm13937-201ENSMUST00000121000 988 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm13899-201ENSMUST00000121519 1255 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Mir1896-201ENSMUST00000122641 81 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm22885-201ENSMUST00000157410 107 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 AU017674-201ENSMUST00000222864 720 ntTSL 3 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 AC112945.1-201ENSMUST00000226413 514 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Msrb3-201ENSMUST00000092143 3843 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Gm19040-201ENSMUST00000203280 4726 ntBASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 Stk4-201ENSMUST00000018353 5232 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Sh3rf1Q69ZI1 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Chml-204ENSMUST00000211207 1866 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Platr4-203ENSMUST00000199155 2161 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms