Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Shmt1P50431 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.54□□□□□ -0.56
Shmt1P50431 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Shmt1P50431 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.53□□□□□ -0.56
Shmt1P50431 Tmem184b-202ENSMUST00000178522 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Gm45675-201ENSMUST00000211202 3429 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Gm5244-201ENSMUST00000164001 339 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Gm19918-201ENSMUST00000194858 400 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Gm44647-201ENSMUST00000207402 428 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Gm45258-201ENSMUST00000210042 853 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Gm18706-201ENSMUST00000210053 1066 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Gm3433-201ENSMUST00000210149 1058 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Chordc1-202ENSMUST00000213605 519 ntTSL 2 BASIC11.53□□□□□ -0.56
Shmt1P50431 AC130477.1-201ENSMUST00000226982 420 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Gm8325-201ENSMUST00000099086 453 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
Shmt1P50431 Cdip1-202ENSMUST00000117713 1964 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Shmt1P50431 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Gm37058-201ENSMUST00000193393 1644 ntBASIC11.53□□□□□ -0.56
Shmt1P50431 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Shmt1P50431 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Shmt1P50431 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Shmt1P50431 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Shmt1P50431 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Shmt1P50431 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Shmt1P50431 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Shmt1P50431 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Shmt1P50431 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC11.52□□□□□ -0.56
Shmt1P50431 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Shmt1P50431 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Shmt1P50431 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Shmt1P50431 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Shmt1P50431 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC11.52□□□□□ -0.57
Shmt1P50431 Gm11619-201ENSMUST00000117474 237 ntBASIC11.52□□□□□ -0.57
Shmt1P50431 Platr20-202ENSMUST00000143209 937 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Gm5621-201ENSMUST00000187303 640 ntBASIC11.52□□□□□ -0.57
Shmt1P50431 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC11.52□□□□□ -0.57
Shmt1P50431 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC11.52□□□□□ -0.57
Shmt1P50431 CT573086.4-201ENSMUST00000226729 342 ntBASIC11.52□□□□□ -0.57
Shmt1P50431 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Shmt1P50431 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Shmt1P50431 Gm25125-201ENSMUST00000083340 136 ntBASIC11.52□□□□□ -0.57
Shmt1P50431 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Ttc7b-206ENSMUST00000223020 3307 ntTSL 5 BASIC11.52□□□□□ -0.57
Shmt1P50431 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.52□□□□□ -0.57
Shmt1P50431 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC11.52□□□□□ -0.57
Shmt1P50431 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Shmt1P50431 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Shmt1P50431 Nr1h4-203ENSMUST00000105297 2013 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms