Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Shroom2-201ENSMUST00000062317 6997 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Adgrl3-217ENSMUST00000121707 6690 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Trim39Q9ESN2 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Vamp5-203ENSMUST00000206154 2619 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Slc12a6-204ENSMUST00000110991 4556 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Lingo1-206ENSMUST00000210032 3627 ntTSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Tbl3-202ENSMUST00000126319 5226 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm7851-201ENSMUST00000117574 323 ntBASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm14603-201ENSMUST00000121275 448 ntBASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm16158-201ENSMUST00000123509 785 ntTSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Mdm4-206ENSMUST00000186617 4694 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm8581-201ENSMUST00000188636 890 ntBASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm4870-201ENSMUST00000198525 1251 ntBASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm43553-201ENSMUST00000200900 685 ntBASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Olfr1480-203ENSMUST00000207904 1209 ntAPPRIS P1 TSL 3 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 AC112945.1-201ENSMUST00000226413 514 ntBASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Olfr1480-201ENSMUST00000072219 948 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Kalrn-203ENSMUST00000114947 2922 ntTSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Specc1l-201ENSMUST00000040105 5928 ntTSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Hjurp-201ENSMUST00000054674 4878 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Rhobtb1-201ENSMUST00000020101 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Nlgn1-205ENSMUST00000193603 11807 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Olfr1171-ps1-202ENSMUST00000150178 1398 ntTSL 3 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Unc5cl-201ENSMUST00000074574 2838 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Trim39Q9ESN2 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Adcy7-202ENSMUST00000168545 5937 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Slx1b-203ENSMUST00000144897 3152 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Gm43052-201ENSMUST00000201451 1628 ntBASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Sgcz-201ENSMUST00000118896 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 A830010M20Rik-208ENSMUST00000211896 5256 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Dchs2-201ENSMUST00000191829 10783 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Loxl4-201ENSMUST00000026190 3738 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Abca3-203ENSMUST00000117337 5202 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Gm6461-201ENSMUST00000120015 633 ntBASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC10.37□□□□□ -0.75
Trim39Q9ESN2 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Fabp12-204ENSMUST00000172126 779 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Vmn1r60-201ENSMUST00000173782 1007 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Gm25732-201ENSMUST00000175168 60 ntBASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 1700003C15Rik-202ENSMUST00000188236 710 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 B230110G15Rik-201ENSMUST00000190868 772 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Gm37638-201ENSMUST00000194337 1123 ntBASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 AC165351.1-201ENSMUST00000219078 2020 ntBASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim39Q9ESN2 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms