Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm13426-201ENSMUST00000117887 795 ntBASIC11.61□□□□□ -0.55
Clp1Q99LI9 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm829-201ENSMUST00000123741 465 ntTSL 3 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm45716-201ENSMUST00000124877 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm13857-201ENSMUST00000139645 173 ntBASIC11.61□□□□□ -0.55
Clp1Q99LI9 2210408F21Rik-209ENSMUST00000146778 579 ntTSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm3115-202ENSMUST00000177660 618 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm6337-203ENSMUST00000177662 618 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm3727-202ENSMUST00000178251 618 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm40414-201ENSMUST00000197608 481 ntBASIC11.61□□□□□ -0.55
Clp1Q99LI9 AC124613.1-201ENSMUST00000198711 88 ntBASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm44663-201ENSMUST00000206898 3150 ntBASIC11.61□□□□□ -0.55
Clp1Q99LI9 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Clp1Q99LI9 Gm42995-201ENSMUST00000197047 1330 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm8684-201ENSMUST00000195078 1564 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Srd5a3-203ENSMUST00000113507 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Ywhaq-ps3-201ENSMUST00000120944 738 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm6471-202ENSMUST00000148734 587 ntTSL 2 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm26174-201ENSMUST00000158415 219 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 A330048O09Rik-201ENSMUST00000180777 672 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm7539-201ENSMUST00000189789 630 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm43726-201ENSMUST00000199110 775 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm5738-201ENSMUST00000206016 779 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Olfr1460-ps1-201ENSMUST00000208975 899 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Madcam1-202ENSMUST00000217748 944 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Olfr1335-202ENSMUST00000219094 1148 ntAPPRIS P2 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 AC133496.1-201ENSMUST00000223891 743 ntBASIC11.6□□□□□ -0.55
Clp1Q99LI9 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Olfr1335-201ENSMUST00000084313 1148 ntAPPRIS ALT2 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Clp1Q99LI9 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms