Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Sgk3-204ENSMUST00000171265 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Zw10-201ENSMUST00000034803 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Smarca5-ps-201ENSMUST00000121843 3123 ntBASIC13.02□□□□□ -0.33
Rfx1P48377 Fgf14-201ENSMUST00000026631 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Hmgcll1-205ENSMUST00000183425 3239 ntTSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 Suclg2-204ENSMUST00000204224 3367 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Cacna1c-226ENSMUST00000219833 7591 ntTSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 Fbxl18-202ENSMUST00000110766 7857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm16702-201ENSMUST00000181180 2384 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Pcdha4-201ENSMUST00000192295 4129 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Olfr370-203ENSMUST00000214156 2475 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Rfx1P48377 Ccdc148-204ENSMUST00000226455 4612 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
Rfx1P48377 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm24990-201ENSMUST00000157406 323 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Gm24992-201ENSMUST00000157412 130 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm42859-201ENSMUST00000199572 193 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Gm43916-201ENSMUST00000205062 967 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC13.01□□□□□ -0.33
Rfx1P48377 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Rfx1P48377 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC13.01□□□□□ -0.33
Rfx1P48377 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Rfx1P48377 Commd1-204ENSMUST00000159081 4508 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Gm7742-201ENSMUST00000167648 1527 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Gm7732-201ENSMUST00000170486 1527 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Gm7740-201ENSMUST00000186171 1527 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Gm7736-201ENSMUST00000096981 1527 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 AC159308.2-201ENSMUST00000213592 2325 ntBASIC13.01□□□□□ -0.33
Rfx1P48377 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Mgme1-201ENSMUST00000028910 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Srpk1-204ENSMUST00000130643 4465 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Rfx1P48377 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Rfx1P48377 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Rfx1P48377 Tsix-202ENSMUST00000211291 3263 ntTSL 5 BASIC13□□□□□ -0.33
Rfx1P48377 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 4732487G21Rik-201ENSMUST00000181495 2664 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 AC122881.1-201ENSMUST00000225757 2695 ntBASIC13□□□□□ -0.33
Rfx1P48377 Tex11-202ENSMUST00000113716 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Nop2-201ENSMUST00000044200 2597 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Gm38025-201ENSMUST00000193926 2308 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Slc22a14-204ENSMUST00000170400 2110 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Rfx1P48377 Gm45089-201ENSMUST00000208082 2040 ntBASIC13□□□□□ -0.33
Rfx1P48377 Pld5-203ENSMUST00000111167 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 AC166836.1-201ENSMUST00000219933 1795 ntBASIC13□□□□□ -0.33
Rfx1P48377 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Rfx1P48377 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC13□□□□□ -0.33
Rfx1P48377 Mamld1-201ENSMUST00000082088 4796 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
Rfx1P48377 Gm42851-201ENSMUST00000201325 1411 ntBASIC13□□□□□ -0.33
Rfx1P48377 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Arhgap45-202ENSMUST00000099501 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Eapp-202ENSMUST00000110713 886 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Sgcg-202ENSMUST00000121148 1298 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Gm12749-201ENSMUST00000122138 1159 ntBASIC13□□□□□ -0.33
Rfx1P48377 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC13□□□□□ -0.33
Rfx1P48377 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Gm37319-201ENSMUST00000193500 636 ntBASIC13□□□□□ -0.33
Rfx1P48377 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Gm31941-201ENSMUST00000209689 350 ntBASIC13□□□□□ -0.33
Rfx1P48377 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC13□□□□□ -0.33
Rfx1P48377 CT009546.1-201ENSMUST00000222573 1120 ntBASIC13□□□□□ -0.33
Rfx1P48377 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC13□□□□□ -0.33
Rfx1P48377 4930417O13Rik-203ENSMUST00000204911 3458 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Tmed5-205ENSMUST00000119437 3436 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Gpm6b-206ENSMUST00000112228 3083 ntTSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Zfp827-203ENSMUST00000119254 4549 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Lox-202ENSMUST00000171470 4468 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Slc6a12-201ENSMUST00000032200 2644 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms