Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm10238-201ENSMUST00000089689 408 ntBASIC10.42□□□□□ -0.74
Cdx2P43241 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC10.42□□□□□ -0.74
Cdx2P43241 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Adgrv1-214ENSMUST00000224088 1492 ntBASIC10.42□□□□□ -0.74
Cdx2P43241 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Slc6a20b-201ENSMUST00000026273 6307 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Cdx2P43241 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm38273-201ENSMUST00000194987 2382 ntBASIC10.41□□□□□ -0.74
Cdx2P43241 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm8684-201ENSMUST00000195078 1564 ntBASIC10.41□□□□□ -0.74
Cdx2P43241 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC10.41□□□□□ -0.74
Cdx2P43241 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm12009-201ENSMUST00000121361 1100 ntBASIC10.41□□□□□ -0.74
Cdx2P43241 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm7539-201ENSMUST00000189789 630 ntBASIC10.41□□□□□ -0.74
Cdx2P43241 Gm42732-201ENSMUST00000202887 1197 ntBASIC10.41□□□□□ -0.74
Cdx2P43241 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm26861-207ENSMUST00000223253 1095 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 AC154436.1-201ENSMUST00000227272 782 ntBASIC10.41□□□□□ -0.74
Cdx2P43241 Mptx1-201ENSMUST00000027816 799 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Rpl9-201ENSMUST00000057885 738 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC10.41□□□□□ -0.74
Cdx2P43241 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC10.41□□□□□ -0.74
Cdx2P43241 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Cdx2P43241 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 AC137950.2-202ENSMUST00000227150 1635 ntBASIC10.4□□□□□ -0.74
Cdx2P43241 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Cdx2P43241 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC10.4□□□□□ -0.74
Cdx2P43241 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC10.4□□□□□ -0.74
Cdx2P43241 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Gm23132-201ENSMUST00000104254 132 ntBASIC10.4□□□□□ -0.74
Cdx2P43241 Gm13426-201ENSMUST00000117887 795 ntBASIC10.4□□□□□ -0.74
Cdx2P43241 Gm6238-201ENSMUST00000120999 465 ntBASIC10.4□□□□□ -0.74
Cdx2P43241 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC10.4□□□□□ -0.74
Cdx2P43241 Gm12688-201ENSMUST00000136525 701 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Gm5860-201ENSMUST00000137810 1028 ntTSL 2 BASIC10.4□□□□□ -0.74
Cdx2P43241 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx2P43241 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC10.4□□□□□ -0.74
Cdx2P43241 Mipep-ps-201ENSMUST00000177439 291 ntBASIC10.4□□□□□ -0.74
Cdx2P43241 Rpl15-ps2-201ENSMUST00000184247 613 ntBASIC10.4□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms