Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 AC154314.2-201ENSMUST00000223677 3502 ntBASIC12.71□□□□□ -0.37
Traf1P39428 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Traf1P39428 Gm23612-201ENSMUST00000103823 110 ntBASIC12.71□□□□□ -0.37
Traf1P39428 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC12.71□□□□□ -0.37
Traf1P39428 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Gm23576-201ENSMUST00000179918 110 ntBASIC12.71□□□□□ -0.37
Traf1P39428 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Gm9487-201ENSMUST00000216600 472 ntBASIC12.71□□□□□ -0.37
Traf1P39428 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
Traf1P39428 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC12.71□□□□□ -0.38
Traf1P39428 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Traf1P39428 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC12.71□□□□□ -0.38
Traf1P39428 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC12.71□□□□□ -0.38
Traf1P39428 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Traf1P39428 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Traf1P39428 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Traf1P39428 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Gm44740-201ENSMUST00000205603 1614 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Gm7642-201ENSMUST00000216345 1809 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Gm5944-201ENSMUST00000118182 1001 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC12.7□□□□□ -0.38
Traf1P39428 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC12.7□□□□□ -0.38
Traf1P39428 Adora3-202ENSMUST00000164730 1219 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Gm26989-201ENSMUST00000182608 749 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Mir7035-201ENSMUST00000184713 82 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Gm17889-201ENSMUST00000198410 598 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC12.7□□□□□ -0.38
Traf1P39428 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC12.7□□□□□ -0.38
Traf1P39428 AC154435.1-201ENSMUST00000223938 959 ntBASIC12.7□□□□□ -0.38
Traf1P39428 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Traf1P39428 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Traf1P39428 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Tmem92-201ENSMUST00000100554 2043 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Traf1P39428 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Traf1P39428 Tceal8-204ENSMUST00000163584 2358 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Traf1P39428 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC12.7□□□□□ -0.38
Traf1P39428 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Traf1P39428 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Traf1P39428 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Gm29358-202ENSMUST00000187941 3227 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Traf1P39428 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Traf1P39428 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Traf1P39428 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Gm7405-201ENSMUST00000121476 1337 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Traf1P39428 Gm15003-201ENSMUST00000118884 446 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Gm15196-201ENSMUST00000121406 482 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms