Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm6548-201ENSMUST00000167498 1165 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm18367-201ENSMUST00000176139 600 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm37028-201ENSMUST00000194276 107 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm42657-201ENSMUST00000201746 211 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm7940-201ENSMUST00000218195 769 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 2010111I01Rik-201ENSMUST00000021911 2979 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 AC154257.1-202ENSMUST00000224729 843 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 AC122350.1-201ENSMUST00000228135 533 ntBASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 C530005A16Rik-201ENSMUST00000142815 2436 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sh3rf1Q69ZI1 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Slfn1-201ENSMUST00000037994 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Abhd4-201ENSMUST00000041197 2401 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Clp1-203ENSMUST00000165219 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm25076-201ENSMUST00000104098 132 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm4993-201ENSMUST00000118719 1174 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm24844-201ENSMUST00000158679 127 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm3150-201ENSMUST00000166418 204 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm21092-201ENSMUST00000178995 955 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm12407-201ENSMUST00000180219 324 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm28707-201ENSMUST00000186134 558 ntTSL 3 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm7593-201ENSMUST00000187246 644 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 AC114573.1-201ENSMUST00000224120 1210 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm38901-201ENSMUST00000202448 3008 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 AC124732.3-201ENSMUST00000221835 1765 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Sox13-203ENSMUST00000144386 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Gm26684-202ENSMUST00000228229 8257 ntBASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Inf2-201ENSMUST00000101029 4001 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sh3rf1Q69ZI1 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Slc7a3-203ENSMUST00000113710 2750 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Capn8-201ENSMUST00000048941 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 CT009489.1-201ENSMUST00000227740 1893 ntBASIC11.15□□□□□ -0.63
Sh3rf1Q69ZI1 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Gm38357-201ENSMUST00000195382 2464 ntBASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 2410004P03Rik-201ENSMUST00000095823 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Rab2b-201ENSMUST00000022765 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Nrp1-201ENSMUST00000026917 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Gimap8-202ENSMUST00000203083 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sh3rf1Q69ZI1 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms