Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 AC166359.1-201ENSMUST00000220243 1871 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Snord23-201ENSMUST00000116828 109 ntBASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Mir6998-201ENSMUST00000183343 64 ntBASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm19013-201ENSMUST00000183895 1222 ntBASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm19014-201ENSMUST00000184828 1189 ntBASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm45165-201ENSMUST00000207763 1631 ntBASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 CT025618.1-203ENSMUST00000227008 589 ntBASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Zw10-201ENSMUST00000034803 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Upf3bQ3ULL6 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Mir1901-201ENSMUST00000122616 78 ntBASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm29283-201ENSMUST00000187394 288 ntTSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm5100-201ENSMUST00000195631 589 ntBASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm18042-201ENSMUST00000219887 790 ntBASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 AC099645.1-201ENSMUST00000226476 1105 ntBASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Upf3bQ3ULL6 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms