Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm6903-201ENSMUST00000160509 1366 ntBASIC13.05□□□□□ -0.32
Rfx1P48377 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Rfx1P48377 Gm10417-201ENSMUST00000194341 3522 ntBASIC13.05□□□□□ -0.32
Rfx1P48377 Gm27177-201ENSMUST00000183339 2946 ntTSL 5 BASIC13.05□□□□□ -0.32
Rfx1P48377 Ahrr-201ENSMUST00000022059 4754 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Rfx1P48377 Gm6714-201ENSMUST00000218677 2330 ntBASIC13.05□□□□□ -0.32
Rfx1P48377 Scrn1-201ENSMUST00000019268 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Rfx1P48377 Oas1h-201ENSMUST00000072476 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Rfx1P48377 Rbp1-201ENSMUST00000052068 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Rfx1P48377 Specc1l-201ENSMUST00000040105 5928 ntTSL 5 BASIC13.04□□□□□ -0.32
Rfx1P48377 Cfap43-202ENSMUST00000095998 3764 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Slc5a9-201ENSMUST00000102719 2460 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Arhgap6-204ENSMUST00000112129 2487 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 6430562O15Rik-201ENSMUST00000180491 2488 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Gm33366-201ENSMUST00000195583 3827 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Cox17-202ENSMUST00000120495 3690 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Gm10643-201ENSMUST00000098592 1577 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Rfx1P48377 Shank2-201ENSMUST00000097929 4418 ntTSL 5 BASIC13.04□□□□□ -0.32
Rfx1P48377 5730596B20Rik-201ENSMUST00000070587 3354 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Rfx1P48377 9430064I24Rik-201ENSMUST00000206516 2669 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 Zkscan6-201ENSMUST00000018491 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Atxn1l-202ENSMUST00000212605 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC13.04□□□□□ -0.32
Rfx1P48377 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC13.04□□□□□ -0.32
Rfx1P48377 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC13.04□□□□□ -0.32
Rfx1P48377 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC13.04□□□□□ -0.32
Rfx1P48377 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.04□□□□□ -0.32
Rfx1P48377 Ighv1-48-201ENSMUST00000191795 294 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 Gm43179-201ENSMUST00000198797 275 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Gm18730-201ENSMUST00000218038 343 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC13.04□□□□□ -0.32
Rfx1P48377 CT573047.1-201ENSMUST00000223652 851 ntBASIC13.04□□□□□ -0.32
Rfx1P48377 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Rfx1P48377 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Rfx1P48377 Zfp330-201ENSMUST00000034147 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Ank3-204ENSMUST00000092432 5832 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Rfx1P48377 Gfi1b-204ENSMUST00000164290 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 Dcaf12l1-201ENSMUST00000060481 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Rfx1P48377 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Gm45699-201ENSMUST00000212838 1576 ntTSL 2 BASIC13.03□□□□□ -0.32
Rfx1P48377 Dnm2-202ENSMUST00000091087 3450 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Zfp111-202ENSMUST00000073833 3079 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Rfx1P48377 Gm21142-201ENSMUST00000179999 2604 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 Gm28693-201ENSMUST00000189622 2638 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Zfp141-203ENSMUST00000174407 4069 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Gm44445-201ENSMUST00000204075 2683 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Rfx1P48377 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Gm11244-201ENSMUST00000121243 237 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC13.03□□□□□ -0.32
Rfx1P48377 Gm9540-201ENSMUST00000188230 478 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 Gm43692-201ENSMUST00000198236 1062 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Rfx1P48377 Olfr582-201ENSMUST00000098212 960 ntBASIC13.03□□□□□ -0.32
Rfx1P48377 Bsdc1-201ENSMUST00000048162 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 4930589L23Rik-201ENSMUST00000091023 1364 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Shroom2-201ENSMUST00000062317 6997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Gm11131-201ENSMUST00000113886 3122 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 5830411N06Rik-203ENSMUST00000164583 3342 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Rfx1P48377 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Rfx1P48377 Cckar-202ENSMUST00000200691 3230 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Rfx1P48377 Specc1-208ENSMUST00000201624 2518 ntTSL 5 BASIC13.02□□□□□ -0.32
Rfx1P48377 Dglucy-201ENSMUST00000069782 3295 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Rfx1P48377 Pak7-201ENSMUST00000035264 4848 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Rfx1P48377 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Rfx1P48377 Fam53c-202ENSMUST00000097622 4256 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Rfx1P48377 Gm24891-201ENSMUST00000104391 136 ntBASIC13.02□□□□□ -0.33
Rfx1P48377 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Rfx1P48377 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC13.02□□□□□ -0.33
Rfx1P48377 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Gm23085-201ENSMUST00000157849 293 ntBASIC13.02□□□□□ -0.33
Rfx1P48377 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Rfx1P48377 Mdm4-206ENSMUST00000186617 4694 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC13.02□□□□□ -0.33
Rfx1P48377 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC13.02□□□□□ -0.33
Rfx1P48377 Gm9111-201ENSMUST00000219394 709 ntBASIC13.02□□□□□ -0.33
Rfx1P48377 AC154436.1-201ENSMUST00000227272 782 ntBASIC13.02□□□□□ -0.33
Rfx1P48377 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Rfx1P48377 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Gm25125-201ENSMUST00000083340 136 ntBASIC13.02□□□□□ -0.33
Rfx1P48377 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Dhtkd1-201ENSMUST00000026924 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Elmo3-201ENSMUST00000109375 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Rpap2-201ENSMUST00000065422 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Rfx1P48377 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC13.02□□□□□ -0.33
Rfx1P48377 Phf24-203ENSMUST00000107976 6538 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms