Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm16166-201ENSMUST00000118291 787 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm14942-201ENSMUST00000119642 336 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
Hoxd3P09027 1700083H02Rik-201ENSMUST00000190526 637 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm19086-201ENSMUST00000190772 665 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm38006-201ENSMUST00000192421 697 ntTSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm17877-201ENSMUST00000192578 814 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm43520-201ENSMUST00000197996 164 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm43136-201ENSMUST00000200403 636 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm35960-201ENSMUST00000202712 767 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm44636-201ENSMUST00000206130 755 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm20274-201ENSMUST00000206967 584 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm39662-201ENSMUST00000211909 1227 ntTSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 AC161426.1-201ENSMUST00000214137 286 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 A430103D13Rik-201ENSMUST00000220077 857 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC8.89□□□□□ -0.99
Hoxd3P09027 AC165260.2-203ENSMUST00000224237 336 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 AC140293.1-201ENSMUST00000225626 1247 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Olfr780-201ENSMUST00000063168 1025 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
Hoxd3P09027 A730045E13Rik-201ENSMUST00000066740 854 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Rangap1-201ENSMUST00000052374 2954 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm42463-201ENSMUST00000198041 4886 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 AC154639.1-201ENSMUST00000224393 2849 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
Hoxd3P09027 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC8.89□□□□□ -0.99
Hoxd3P09027 AC169511.2-201ENSMUST00000226674 2063 ntBASIC8.89□□□□□ -0.99
Hoxd3P09027 Gm18642-201ENSMUST00000206642 1400 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Olfr197-202ENSMUST00000207772 1320 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm14071-201ENSMUST00000117817 509 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Cox7c-204ENSMUST00000132233 709 ntTSL 2 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm14095-201ENSMUST00000134264 516 ntTSL 3 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm28437-201ENSMUST00000190277 783 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 4930540E01Rik-201ENSMUST00000192569 1146 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm45219-201ENSMUST00000205602 465 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 1700014L14Rik-201ENSMUST00000211704 481 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC8.88□□□□□ -0.99
Hoxd3P09027 CAAA01216754.4-201ENSMUST00000216416 802 ntTSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Desi2-202ENSMUST00000069568 1193 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms