Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Itpr1-201ENSMUST00000032192 9870 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Ap3m1-206ENSMUST00000154460 6732 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Ccdc180-204ENSMUST00000178561 5081 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gramd1b-213ENSMUST00000211853 2659 ntTSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm16702-201ENSMUST00000181180 2384 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 Ctnnd1-212ENSMUST00000111686 6061 ntTSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 A130010J15Rik-205ENSMUST00000178744 3782 ntAPPRIS P1 TSL 2 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Ampd3-206ENSMUST00000170374 3489 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Slc19a1-208ENSMUST00000136925 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Ebpl-201ENSMUST00000022494 10092 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Apobr-201ENSMUST00000039522 3685 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Vwce-201ENSMUST00000055115 3540 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm5380-201ENSMUST00000119296 2136 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm6714-201ENSMUST00000218677 2330 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Tdrd1-203ENSMUST00000111606 4914 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Dusp16-202ENSMUST00000129433 3993 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Epc1-201ENSMUST00000028100 3965 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Myo15-201ENSMUST00000071880 11769 ntAPPRIS P4 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm44888-201ENSMUST00000209119 2541 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Gm29125-201ENSMUST00000187121 3220 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Gm11735-201ENSMUST00000106377 1581 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Ank3-220ENSMUST00000182439 2586 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Atcayos-203ENSMUST00000150782 3057 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Synpo2-207ENSMUST00000198584 9203 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Zfp111-202ENSMUST00000073833 3079 ntAPPRIS P3 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Zfp775-201ENSMUST00000061720 4083 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 AC140462.2-201ENSMUST00000225718 2433 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Gm3372-201ENSMUST00000198806 1792 ntBASIC9□□□□□ -0.97
Hmgb3O54879 C330027C09Rik-202ENSMUST00000117994 3977 ntTSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 C330027C09Rik-201ENSMUST00000048374 3974 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Gm23931-201ENSMUST00000103842 109 ntBASIC9□□□□□ -0.97
Hmgb3O54879 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Gm27046-201ENSMUST00000182160 463 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Gm37597-201ENSMUST00000191853 382 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Gm42629-201ENSMUST00000199063 1102 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Gm45691-201ENSMUST00000206905 1120 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Gm9823-201ENSMUST00000051212 327 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Phactr1-205ENSMUST00000128646 5430 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC9□□□□□ -0.97
Hmgb3O54879 Gm28268-201ENSMUST00000188966 2528 ntTSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Gpi1-201ENSMUST00000038027 2884 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Tmed5-205ENSMUST00000119437 3436 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC9□□□□□ -0.97
Hmgb3O54879 Plch1-201ENSMUST00000048134 6259 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Zfp956-201ENSMUST00000101445 2761 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Nlrx1-201ENSMUST00000034621 3669 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Irf4-202ENSMUST00000110307 4761 ntAPPRIS ALT1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Irf4-201ENSMUST00000021784 4764 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Thbs3-202ENSMUST00000119084 2993 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Il1rl1-202ENSMUST00000097772 5302 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Utrn-205ENSMUST00000218635 11801 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 2310057M21Rik-201ENSMUST00000059438 6773 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 E230020D15Rik-201ENSMUST00000208097 5899 ntBASIC9□□□□□ -0.97
Hmgb3O54879 Zfp652-202ENSMUST00000107717 10433 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Hmgb3O54879 Zmym3-203ENSMUST00000117901 5178 ntTSL 1 (best) BASIC9□□□□□ -0.97
Hmgb3O54879 Sptan1-208ENSMUST00000129241 7585 ntTSL 5 BASIC8.99□□□□□ -0.97
Hmgb3O54879 Slc5a9-201ENSMUST00000102719 2460 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hmgb3O54879 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hmgb3O54879 Gm43375-201ENSMUST00000196705 2480 ntBASIC8.99□□□□□ -0.97
Hmgb3O54879 Actn2-201ENSMUST00000064204 3013 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hmgb3O54879 Gnl3l-202ENSMUST00000112691 4869 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hmgb3O54879 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hmgb3O54879 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hmgb3O54879 Rnf121-203ENSMUST00000106953 2545 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hmgb3O54879 Cacna1c-220ENSMUST00000189520 6570 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
Hmgb3O54879 Cenpl-201ENSMUST00000028035 4883 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms