Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Vps53Q8CCB4 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Vps53Q8CCB4 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Vps53Q8CCB4 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Vps53Q8CCB4 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Vps53Q8CCB4 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Vps53Q8CCB4 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Vps53Q8CCB4 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Vps53Q8CCB4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Vps53Q8CCB4 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Vps53Q8CCB4 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Vps53Q8CCB4 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Vps53Q8CCB4 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Vps53Q8CCB4 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Vps53Q8CCB4 Gm5297-201ENSMUST00000198555 1171 ntBASIC23.31■■□□□ 1.32
Vps53Q8CCB4 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Vps53Q8CCB4 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Vps53Q8CCB4 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Vps53Q8CCB4 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Vps53Q8CCB4 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Vps53Q8CCB4 Gm9207-201ENSMUST00000198773 1115 ntBASIC23.3■■□□□ 1.32
Vps53Q8CCB4 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Vps53Q8CCB4 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Vps53Q8CCB4 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Vps53Q8CCB4 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Vps53Q8CCB4 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Vps53Q8CCB4 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Vps53Q8CCB4 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC23.29■■□□□ 1.32
Vps53Q8CCB4 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC23.29■■□□□ 1.32
Vps53Q8CCB4 Flvcr1-202ENSMUST00000191946 1216 ntBASIC23.29■■□□□ 1.32
Vps53Q8CCB4 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Vps53Q8CCB4 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
Vps53Q8CCB4 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC23.29■■□□□ 1.32
Vps53Q8CCB4 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps53Q8CCB4 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps53Q8CCB4 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps53Q8CCB4 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
Vps53Q8CCB4 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps53Q8CCB4 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps53Q8CCB4 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps53Q8CCB4 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Vps53Q8CCB4 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
Vps53Q8CCB4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Vps53Q8CCB4 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC23.27■■□□□ 1.32
Vps53Q8CCB4 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Vps53Q8CCB4 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Vps53Q8CCB4 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Vps53Q8CCB4 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC23.26■■□□□ 1.31
Vps53Q8CCB4 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Vps53Q8CCB4 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Vps53Q8CCB4 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Vps53Q8CCB4 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Vps53Q8CCB4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Vps53Q8CCB4 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Vps53Q8CCB4 Slc35b2-207ENSMUST00000226086 850 ntBASIC23.25■■□□□ 1.31
Vps53Q8CCB4 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC23.25■■□□□ 1.31
Vps53Q8CCB4 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Vps53Q8CCB4 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
Vps53Q8CCB4 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Hsf1-207ENSMUST00000228371 2102 ntBASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Gm8495-201ENSMUST00000188740 694 ntBASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Vps53Q8CCB4 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Vps53Q8CCB4 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Vps53Q8CCB4 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC23.22■■□□□ 1.31
Vps53Q8CCB4 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Vps53Q8CCB4 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC23.22■■□□□ 1.31
Vps53Q8CCB4 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Vps53Q8CCB4 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps53Q8CCB4 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Vps53Q8CCB4 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms