Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Smarca1Q6PGB8 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC22.43■■□□□ 1.18
Smarca1Q6PGB8 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Smarca1Q6PGB8 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC22.43■■□□□ 1.18
Smarca1Q6PGB8 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC22.43■■□□□ 1.18
Smarca1Q6PGB8 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Smarca1Q6PGB8 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Smarca1Q6PGB8 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 Appbp2os-202ENSMUST00000206972 447 ntBASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Smarca1Q6PGB8 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Smarca1Q6PGB8 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Smarca1Q6PGB8 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Smarca1Q6PGB8 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
Smarca1Q6PGB8 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Smarca1Q6PGB8 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC22.39■■□□□ 1.18
Smarca1Q6PGB8 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
Smarca1Q6PGB8 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Smarca1Q6PGB8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC22.39■■□□□ 1.18
Smarca1Q6PGB8 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Smarca1Q6PGB8 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Smarca1Q6PGB8 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC22.39■■□□□ 1.17
Smarca1Q6PGB8 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Smarca1Q6PGB8 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Smarca1Q6PGB8 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Smarca1Q6PGB8 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Smarca1Q6PGB8 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
Smarca1Q6PGB8 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Gm37035-201ENSMUST00000194809 2148 ntBASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Smarca1Q6PGB8 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Smarca1Q6PGB8 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
Smarca1Q6PGB8 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
Smarca1Q6PGB8 Gm10657-201ENSMUST00000193528 1031 ntBASIC22.37■■□□□ 1.17
Smarca1Q6PGB8 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Smarca1Q6PGB8 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Smarca1Q6PGB8 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Gm9207-201ENSMUST00000198773 1115 ntBASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC22.36■■□□□ 1.17
Smarca1Q6PGB8 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC22.35■■□□□ 1.17
Smarca1Q6PGB8 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Smarca1Q6PGB8 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Smarca1Q6PGB8 Krt8-ps-201ENSMUST00000208495 945 ntBASIC22.35■■□□□ 1.17
Smarca1Q6PGB8 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Smarca1Q6PGB8 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Smarca1Q6PGB8 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Smarca1Q6PGB8 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Smarca1Q6PGB8 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Smarca1Q6PGB8 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Smarca1Q6PGB8 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Smarca1Q6PGB8 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Smarca1Q6PGB8 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC22.33■■□□□ 1.17
Smarca1Q6PGB8 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.16
Smarca1Q6PGB8 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
Smarca1Q6PGB8 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Smarca1Q6PGB8 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms