Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC31.58■■■□□ 2.65
Cux1P53564 Gm44949-201ENSMUST00000206423 1450 ntBASIC31.58■■■□□ 2.65
Cux1P53564 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Cux1P53564 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Cux1P53564 Gm14281-201ENSMUST00000121700 1294 ntBASIC31.57■■■□□ 2.64
Cux1P53564 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Cux1P53564 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Cux1P53564 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Cux1P53564 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC31.57■■■□□ 2.64
Cux1P53564 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
Cux1P53564 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Cux1P53564 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
Cux1P53564 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
Cux1P53564 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Cux1P53564 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC31.56■■■□□ 2.64
Cux1P53564 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC31.56■■■□□ 2.64
Cux1P53564 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
Cux1P53564 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Cux1P53564 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Cux1P53564 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC31.55■■■□□ 2.64
Cux1P53564 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC31.55■■■□□ 2.64
Cux1P53564 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Cux1P53564 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Cux1P53564 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC31.54■■■□□ 2.64
Cux1P53564 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Cux1P53564 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC31.54■■■□□ 2.64
Cux1P53564 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Cux1P53564 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Cux1P53564 Spcs1-207ENSMUST00000228767 1008 ntBASIC31.54■■■□□ 2.64
Cux1P53564 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Cux1P53564 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Cux1P53564 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Cux1P53564 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC31.53■■■□□ 2.64
Cux1P53564 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC31.53■■■□□ 2.64
Cux1P53564 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Cux1P53564 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Cux1P53564 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
Cux1P53564 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Cux1P53564 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Cux1P53564 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Cux1P53564 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC31.51■■■□□ 2.63
Cux1P53564 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC31.51■■■□□ 2.63
Cux1P53564 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Cux1P53564 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Cux1P53564 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.63
Cux1P53564 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Cux1P53564 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Cux1P53564 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
Cux1P53564 Mir6236-201ENSMUST00000184437 123 ntBASIC31.5■■■□□ 2.63
Cux1P53564 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC31.5■■■□□ 2.63
Cux1P53564 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Cux1P53564 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Cux1P53564 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
Cux1P53564 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
Cux1P53564 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
Cux1P53564 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Cux1P53564 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC31.49■■■□□ 2.63
Cux1P53564 AC112142.1-201ENSMUST00000228796 918 ntBASIC31.49■■■□□ 2.63
Cux1P53564 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Cux1P53564 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
Cux1P53564 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Cux1P53564 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC31.48■■■□□ 2.63
Cux1P53564 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC31.48■■■□□ 2.63
Cux1P53564 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Cux1P53564 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Cux1P53564 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC31.47■■■□□ 2.63
Cux1P53564 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Cux1P53564 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Cux1P53564 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Cux1P53564 AC137127.1-201ENSMUST00000213466 1078 ntBASIC31.46■■■□□ 2.63
Cux1P53564 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Cux1P53564 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC31.45■■■□□ 2.63
Cux1P53564 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC31.45■■■□□ 2.63
Cux1P53564 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Cux1P53564 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC31.45■■■□□ 2.62
Cux1P53564 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC31.45■■■□□ 2.62
Cux1P53564 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Cux1P53564 Gm12669-201ENSMUST00000122162 1009 ntBASIC31.44■■■□□ 2.62
Cux1P53564 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
Cux1P53564 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Cux1P53564 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
Cux1P53564 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Cux1P53564 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Cux1P53564 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Cux1P53564 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Cux1P53564 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC31.43■■■□□ 2.62
Cux1P53564 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Cux1P53564 Reep4-203ENSMUST00000226563 1444 ntBASIC31.43■■■□□ 2.62
Cux1P53564 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Cux1P53564 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Cux1P53564 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Cux1P53564 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Cux1P53564 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC31.41■■■□□ 2.62
Cux1P53564 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
Cux1P53564 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Cux1P53564 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Cux1P53564 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
Cux1P53564 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Cux1P53564 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
Cux1P53564 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms