Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.82■■□□□ 1.08
RaraP11416 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.82■■□□□ 1.08
RaraP11416 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RaraP11416 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RaraP11416 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RaraP11416 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RaraP11416 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
RaraP11416 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RaraP11416 Iqck-206ENSMUST00000208658 2891 ntBASIC21.81■■□□□ 1.08
RaraP11416 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
RaraP11416 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.81■■□□□ 1.08
RaraP11416 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
RaraP11416 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
RaraP11416 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RaraP11416 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RaraP11416 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
RaraP11416 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RaraP11416 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RaraP11416 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RaraP11416 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RaraP11416 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.8■■□□□ 1.08
RaraP11416 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.8■■□□□ 1.08
RaraP11416 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RaraP11416 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RaraP11416 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
RaraP11416 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RaraP11416 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
RaraP11416 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RaraP11416 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RaraP11416 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.79■■□□□ 1.08
RaraP11416 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.79■■□□□ 1.08
RaraP11416 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
RaraP11416 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
RaraP11416 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RaraP11416 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RaraP11416 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
RaraP11416 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.78■■□□□ 1.08
RaraP11416 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RaraP11416 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RaraP11416 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RaraP11416 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.78■■□□□ 1.08
RaraP11416 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RaraP11416 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RaraP11416 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.77■■□□□ 1.08
RaraP11416 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
RaraP11416 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RaraP11416 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RaraP11416 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RaraP11416 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.76■■□□□ 1.07
RaraP11416 Gm7143-201ENSMUST00000222811 859 ntBASIC21.76■■□□□ 1.07
RaraP11416 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RaraP11416 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RaraP11416 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RaraP11416 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.76■■□□□ 1.07
RaraP11416 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RaraP11416 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RaraP11416 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RaraP11416 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RaraP11416 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
RaraP11416 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.74■■□□□ 1.07
RaraP11416 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.74■■□□□ 1.07
RaraP11416 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RaraP11416 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RaraP11416 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RaraP11416 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.74■■□□□ 1.07
RaraP11416 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RaraP11416 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
RaraP11416 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RaraP11416 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.73■■□□□ 1.07
RaraP11416 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.73■■□□□ 1.07
RaraP11416 Gm40881-201ENSMUST00000223397 166 ntBASIC21.73■■□□□ 1.07
RaraP11416 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RaraP11416 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.73■■□□□ 1.07
RaraP11416 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RaraP11416 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RaraP11416 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RaraP11416 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RaraP11416 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RaraP11416 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RaraP11416 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
RaraP11416 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
RaraP11416 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms