Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Sdc4O35988 Gm12251-201ENSMUST00000117893 792 ntBASIC20.77■□□□□ 0.92
Sdc4O35988 Gm43173-201ENSMUST00000202246 593 ntBASIC20.77■□□□□ 0.92
Sdc4O35988 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Sdc4O35988 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Sdc4O35988 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Sdc4O35988 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Sdc4O35988 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Sdc4O35988 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Sdc4O35988 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Sdc4O35988 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Sdc4O35988 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sdc4O35988 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.75■□□□□ 0.91
Sdc4O35988 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.75■□□□□ 0.91
Sdc4O35988 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Sdc4O35988 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sdc4O35988 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.74■□□□□ 0.91
Sdc4O35988 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sdc4O35988 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sdc4O35988 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sdc4O35988 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Sdc4O35988 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Sdc4O35988 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
Sdc4O35988 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sdc4O35988 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
Sdc4O35988 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sdc4O35988 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Sdc4O35988 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Sdc4O35988 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Sdc4O35988 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.71■□□□□ 0.91
Sdc4O35988 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.71■□□□□ 0.91
Sdc4O35988 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 Mir6236-201ENSMUST00000184437 123 ntBASIC20.71■□□□□ 0.91
Sdc4O35988 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sdc4O35988 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.91
Sdc4O35988 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
Sdc4O35988 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sdc4O35988 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sdc4O35988 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.9
Sdc4O35988 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Sdc4O35988 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sdc4O35988 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sdc4O35988 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
Sdc4O35988 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sdc4O35988 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sdc4O35988 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.68■□□□□ 0.9
Sdc4O35988 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
Sdc4O35988 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
Sdc4O35988 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.68■□□□□ 0.9
Sdc4O35988 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Sdc4O35988 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sdc4O35988 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sdc4O35988 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Sdc4O35988 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sdc4O35988 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.67■□□□□ 0.9
Sdc4O35988 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms