Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a3E9PWQ3 Gm18101-201ENSMUST00000215769 548 ntBASIC20.71■□□□□ 0.91
Col6a3E9PWQ3 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Col6a3E9PWQ3 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.7■□□□□ 0.9
Col6a3E9PWQ3 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a3E9PWQ3 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a3E9PWQ3 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a3E9PWQ3 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Col6a3E9PWQ3 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a3E9PWQ3 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Col6a3E9PWQ3 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a3E9PWQ3 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a3E9PWQ3 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a3E9PWQ3 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a3E9PWQ3 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a3E9PWQ3 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a3E9PWQ3 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a3E9PWQ3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a3E9PWQ3 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a3E9PWQ3 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.66■□□□□ 0.9
Col6a3E9PWQ3 AC153881.1-201ENSMUST00000214448 284 ntBASIC20.66■□□□□ 0.9
Col6a3E9PWQ3 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a3E9PWQ3 Gm26524-201ENSMUST00000192339 390 ntBASIC20.66■□□□□ 0.9
Col6a3E9PWQ3 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Col6a3E9PWQ3 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a3E9PWQ3 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col6a3E9PWQ3 Gm27275-201ENSMUST00000184318 272 ntBASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a3E9PWQ3 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col6a3E9PWQ3 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.63■□□□□ 0.89
Col6a3E9PWQ3 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col6a3E9PWQ3 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col6a3E9PWQ3 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col6a3E9PWQ3 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm7290-201ENSMUST00000104990 617 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm12918-201ENSMUST00000120234 636 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm15710-201ENSMUST00000121821 636 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm5075-201ENSMUST00000196916 622 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm11249-201ENSMUST00000117071 859 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Gm6433-201ENSMUST00000118634 875 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.61■□□□□ 0.89
Col6a3E9PWQ3 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.6■□□□□ 0.89
Col6a3E9PWQ3 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a3E9PWQ3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms