Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Zmynd8-205ENSMUST00000109266 5072 ntAPPRIS P4 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Zmynd8-221ENSMUST00000177633 5093 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Iqce-201ENSMUST00000041783 6037 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm25148-201ENSMUST00000104611 123 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm14270-201ENSMUST00000118388 846 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm10169-201ENSMUST00000121822 348 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Mup-ps29-201ENSMUST00000122281 202 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm43692-201ENSMUST00000198236 1062 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 AC124457.1-201ENSMUST00000198845 120 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm45410-201ENSMUST00000211331 1093 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 CT030653.1-201ENSMUST00000224382 1279 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Ap3s1-202ENSMUST00000224622 978 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm10263-201ENSMUST00000085163 300 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Slco5a1-202ENSMUST00000115403 8509 ntAPPRIS P2 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Vwa5b1-201ENSMUST00000030533 7486 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Gm9415-201ENSMUST00000200462 1321 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Ank1-206ENSMUST00000117662 6257 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Nav2-204ENSMUST00000183659 7765 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 AC158636.1-201ENSMUST00000220118 1393 ntBASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Atxn1l-201ENSMUST00000093162 7526 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdc40Q9DC48 Scn9a-201ENSMUST00000100063 9813 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Scn9a-202ENSMUST00000100064 9840 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 AL645745.1-201ENSMUST00000222202 5348 ntTSL 2 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gpat4-201ENSMUST00000167004 5518 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Stard4-201ENSMUST00000025236 5097 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm36957-201ENSMUST00000192982 2824 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm22379-201ENSMUST00000157480 131 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm6407-201ENSMUST00000176468 549 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 AC238811.4-201ENSMUST00000178019 1246 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 AC238940.3-201ENSMUST00000178830 1246 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm23694-201ENSMUST00000179335 110 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm43380-201ENSMUST00000200421 220 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm18059-201ENSMUST00000208073 580 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm5805-201ENSMUST00000072779 456 ntBASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdc40Q9DC48 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms