Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Impa1-202ENSMUST00000118410 2988 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm29410-201ENSMUST00000188383 694 ntBASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 AC154176.1-201ENSMUST00000225897 220 ntBASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Chml-204ENSMUST00000211207 1866 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Unc5cl-201ENSMUST00000074574 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Smc1aQ9CU62 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Clp1-203ENSMUST00000165219 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Umad1-201ENSMUST00000159168 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Spata31d1a-203ENSMUST00000224982 5325 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 AC164161.2-201ENSMUST00000217446 1730 ntTSL 5 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Gm6548-201ENSMUST00000167498 1165 ntBASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Gm9116-201ENSMUST00000192400 1018 ntBASIC12.32□□□□□ -0.44
Smc1aQ9CU62 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Gm3619-201ENSMUST00000219947 775 ntBASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Unc45a-202ENSMUST00000107368 3635 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Smc1aQ9CU62 AC165351.1-201ENSMUST00000219078 2020 ntBASIC12.32□□□□□ -0.44
Smc1aQ9CU62 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Tti2-204ENSMUST00000210129 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm14023-201ENSMUST00000144178 1781 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Anxa7-201ENSMUST00000065504 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Cldn19-202ENSMUST00000094823 4168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm15615-201ENSMUST00000118876 198 ntBASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm8459-201ENSMUST00000162504 760 ntBASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm26134-201ENSMUST00000178484 110 ntBASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Gm3017-201ENSMUST00000203603 1126 ntBASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 AC156501.1-201ENSMUST00000228219 270 ntBASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Smc1aQ9CU62 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms