Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pde5a-201ENSMUST00000066728 6939 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 AC125409.1-201ENSMUST00000223213 3370 ntBASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Upf3bQ3ULL6 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 AC159195.3-201ENSMUST00000225162 2211 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm11952-201ENSMUST00000121172 821 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm12208-201ENSMUST00000122004 163 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm4982-201ENSMUST00000160440 1098 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm9358-201ENSMUST00000183067 927 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Uba52-ps-201ENSMUST00000183770 379 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm34023-201ENSMUST00000195539 217 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm44545-201ENSMUST00000208262 746 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm45592-201ENSMUST00000209605 1043 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 AC166341.2-201ENSMUST00000220571 120 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm4811-201ENSMUST00000220879 1220 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 AC154305.2-201ENSMUST00000225813 901 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Upf3bQ3ULL6 Gm18798-201ENSMUST00000187264 1700 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 AC090962.2-201ENSMUST00000225064 1801 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Camk1d-201ENSMUST00000044009 6962 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm37264-201ENSMUST00000194916 2192 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Cacna1c-224ENSMUST00000219018 7516 ntTSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Mir453-201ENSMUST00000104732 82 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm14270-201ENSMUST00000118388 846 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Gm9102-201ENSMUST00000219250 465 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 AC159196.1-201ENSMUST00000225524 377 ntBASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC11.74□□□□□ -0.53
Upf3bQ3ULL6 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms