Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC11.52□□□□□ -0.57
Usp4P35123 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Gm7600-201ENSMUST00000209657 785 ntBASIC11.52□□□□□ -0.57
Usp4P35123 AC112945.1-201ENSMUST00000226413 514 ntBASIC11.52□□□□□ -0.57
Usp4P35123 AC137950.2-201ENSMUST00000227127 1089 ntBASIC11.52□□□□□ -0.57
Usp4P35123 Gm7551-201ENSMUST00000089593 1074 ntBASIC11.52□□□□□ -0.57
Usp4P35123 Gm19040-201ENSMUST00000203280 4726 ntBASIC11.52□□□□□ -0.57
Usp4P35123 Pgf-201ENSMUST00000004913 1582 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Usp4P35123 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Usp4P35123 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Ppp4r1l-ps-202ENSMUST00000132669 2767 ntBASIC11.52□□□□□ -0.57
Usp4P35123 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Gm44103-201ENSMUST00000204364 3662 ntBASIC11.52□□□□□ -0.57
Usp4P35123 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Usp4P35123 Ncam1-201ENSMUST00000114476 2567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Gm13920-201ENSMUST00000146134 1663 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Usp4P35123 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Usp4P35123 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Usp4P35123 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usp4P35123 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC11.52□□□□□ -0.57
Usp4P35123 Med19-201ENSMUST00000102645 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Cox17-202ENSMUST00000120495 3690 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Serac1-202ENSMUST00000097432 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gpi1-201ENSMUST00000038027 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm7742-201ENSMUST00000167648 1527 ntBASIC11.51□□□□□ -0.57
Usp4P35123 Gm7732-201ENSMUST00000170486 1527 ntBASIC11.51□□□□□ -0.57
Usp4P35123 Gm7740-201ENSMUST00000186171 1527 ntBASIC11.51□□□□□ -0.57
Usp4P35123 Clec12b-201ENSMUST00000032261 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm7736-201ENSMUST00000096981 1527 ntBASIC11.51□□□□□ -0.57
Usp4P35123 St6galnac4-201ENSMUST00000102818 3626 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Inf2-201ENSMUST00000101029 4001 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm45165-201ENSMUST00000207763 1631 ntBASIC11.51□□□□□ -0.57
Usp4P35123 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Usp4P35123 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC11.51□□□□□ -0.57
Usp4P35123 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC11.51□□□□□ -0.57
Usp4P35123 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC11.51□□□□□ -0.57
Usp4P35123 Gm19891-201ENSMUST00000189771 303 ntBASIC11.51□□□□□ -0.57
Usp4P35123 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC11.51□□□□□ -0.57
Usp4P35123 Gm8365-201ENSMUST00000197334 648 ntBASIC11.51□□□□□ -0.57
Usp4P35123 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC11.51□□□□□ -0.57
Usp4P35123 Gm45398-201ENSMUST00000210561 165 ntBASIC11.51□□□□□ -0.57
Usp4P35123 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC11.51□□□□□ -0.57
Usp4P35123 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC11.51□□□□□ -0.57
Usp4P35123 AC164437.3-201ENSMUST00000228323 347 ntBASIC11.51□□□□□ -0.57
Usp4P35123 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Usp4P35123 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 4732490B19Rik-201ENSMUST00000130373 2446 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm32511-202ENSMUST00000217021 2069 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Acsm5-205ENSMUST00000207440 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Sirpa-204ENSMUST00000103203 3674 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Usp4P35123 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Gm3765-201ENSMUST00000130985 1447 ntBASIC11.51□□□□□ -0.57
Usp4P35123 Srpx2-201ENSMUST00000033606 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usp4P35123 Trim65-202ENSMUST00000106440 4040 ntTSL 5 BASIC11.51□□□□□ -0.57
Usp4P35123 Zfp609-201ENSMUST00000159109 7777 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Usp4P35123 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Usp4P35123 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Rasgef1a-203ENSMUST00000203804 2183 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Hcrtr2-203ENSMUST00000184757 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Gm15374-201ENSMUST00000119313 844 ntBASIC11.5□□□□□ -0.57
Usp4P35123 Gm15573-201ENSMUST00000119487 540 ntBASIC11.5□□□□□ -0.57
Usp4P35123 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
Usp4P35123 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC11.5□□□□□ -0.57
Usp4P35123 Gm8815-201ENSMUST00000173809 620 ntBASIC11.5□□□□□ -0.57
Usp4P35123 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Usp4P35123 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC11.5□□□□□ -0.57
Usp4P35123 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usp4P35123 Gm17831-201ENSMUST00000205579 900 ntBASIC11.5□□□□□ -0.57
Usp4P35123 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC11.5□□□□□ -0.57
Usp4P35123 Saa-ps-201ENSMUST00000211148 320 ntBASIC11.5□□□□□ -0.57
Usp4P35123 Gm7395-201ENSMUST00000216059 1045 ntBASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms