Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 AC153380.1-201ENSMUST00000214959 2364 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Ube3a-203ENSMUST00000200758 9856 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Mcm3ap-201ENSMUST00000170795 6427 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Snord17-201ENSMUST00000104526 238 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm15528-201ENSMUST00000117821 864 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm12463-201ENSMUST00000118271 849 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Mir3547-201ENSMUST00000175461 88 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm44545-201ENSMUST00000208262 746 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 CT010506.1-201ENSMUST00000223673 349 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 AC164618.2-201ENSMUST00000224770 573 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm10020-201ENSMUST00000081993 612 ntBASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Chmp6P0C0A3 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm37651-201ENSMUST00000194679 1494 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm13326-201ENSMUST00000118730 1011 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 n-R5s84-201ENSMUST00000122591 109 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm28388-201ENSMUST00000186262 437 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm43163-201ENSMUST00000196571 442 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm44551-201ENSMUST00000208804 171 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 AC114645.1-201ENSMUST00000215831 187 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 AC122024.3-201ENSMUST00000217719 294 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 AC160929.1-201ENSMUST00000221247 415 ntBASIC11.96□□□□□ -0.49
Chmp6P0C0A3 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Rere-202ENSMUST00000105682 7728 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Chmp6P0C0A3 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Adcy7-204ENSMUST00000171456 5951 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 AC125409.1-201ENSMUST00000223213 3370 ntBASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Chmp6P0C0A3 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Chmp6P0C0A3 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Chmp6P0C0A3 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
Chmp6P0C0A3 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Chmp6P0C0A3 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Chmp6P0C0A3 AC158636.1-201ENSMUST00000220118 1393 ntBASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms