Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Gm7841-201ENSMUST00000122108 1629 ntBASIC8.91□□□□□ -0.98
Hoxd3P09027 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Hoxd3P09027 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC8.91□□□□□ -0.98
Hoxd3P09027 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm38089-201ENSMUST00000193585 1514 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm37370-201ENSMUST00000191996 1410 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm42766-201ENSMUST00000200233 1332 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm43984-201ENSMUST00000204572 2864 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm23272-201ENSMUST00000104053 129 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Sh3bgrl3-202ENSMUST00000105879 518 ntTSL 3 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm12419-201ENSMUST00000116649 636 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm11892-201ENSMUST00000117711 1202 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm11500-201ENSMUST00000118237 601 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm11451-201ENSMUST00000118946 630 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm24239-201ENSMUST00000157791 255 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm22138-201ENSMUST00000158748 128 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm10731-201ENSMUST00000181171 448 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm27438-201ENSMUST00000183480 110 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm29588-201ENSMUST00000185738 298 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm37072-201ENSMUST00000194570 837 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm38314-201ENSMUST00000195709 625 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm32554-201ENSMUST00000196310 970 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 1700108N06Rik-201ENSMUST00000196572 681 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 4930437M23Rik-201ENSMUST00000197456 968 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm9023-201ENSMUST00000198408 1038 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm43358-201ENSMUST00000199217 970 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm43131-201ENSMUST00000200042 969 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm7504-201ENSMUST00000201449 424 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm43093-201ENSMUST00000202439 1213 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm32884-201ENSMUST00000205528 732 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm5996-201ENSMUST00000211110 718 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm2875-201ENSMUST00000211333 360 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 AC164629.1-201ENSMUST00000220250 1113 ntBASIC8.9□□□□□ -0.98
Hoxd3P09027 Tas2r103-201ENSMUST00000032317 939 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Csn2-201ENSMUST00000082370 1117 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
Hoxd3P09027 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.98
Hoxd3P09027 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC8.9□□□□□ -0.99
Hoxd3P09027 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Armc9-201ENSMUST00000027434 5127 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.99
Hoxd3P09027 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC8.9□□□□□ -0.99
Hoxd3P09027 Gm42706-201ENSMUST00000199733 1910 ntBASIC8.9□□□□□ -0.99
Hoxd3P09027 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Hoxd3P09027 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms