Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Gm5340-201ENSMUST00000203733 880 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Fcer2a-205ENSMUST00000208145 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Gm7192-201ENSMUST00000210793 1137 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Gm45745-201ENSMUST00000211447 1180 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Gm9204-201ENSMUST00000212641 947 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Csde1-207ENSMUST00000197827 2671 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
Usp40Q8BWR4 Gm21136-201ENSMUST00000186812 2575 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Gm6605-201ENSMUST00000031488 2574 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Moxd2-201ENSMUST00000031937 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Krt34-201ENSMUST00000056362 1609 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm23769-201ENSMUST00000104441 121 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm8152-201ENSMUST00000120842 637 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm15031-201ENSMUST00000121341 210 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm16441-201ENSMUST00000138176 924 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm6038-201ENSMUST00000154310 948 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm7572-201ENSMUST00000182616 766 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Wbp1-209ENSMUST00000205023 716 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC15.03■□□□□ -0
Usp40Q8BWR4 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gm45165-201ENSMUST00000207763 1631 ntBASIC15.03■□□□□ -0
Usp40Q8BWR4 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Usp40Q8BWR4 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm6560-201ENSMUST00000198588 1591 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm6441-201ENSMUST00000120983 696 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm12950-201ENSMUST00000121683 417 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm8601-201ENSMUST00000182096 909 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm8384-201ENSMUST00000190905 704 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm42588-201ENSMUST00000200538 1297 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm6794-201ENSMUST00000203829 457 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm44939-201ENSMUST00000206939 814 ntTSL 3 BASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 AC155300.1-201ENSMUST00000219134 480 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 Gm25125-201ENSMUST00000083340 136 ntBASIC15.02■□□□□ -0
Usp40Q8BWR4 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Usp40Q8BWR4 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Usp40Q8BWR4 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Zscan21-201ENSMUST00000062350 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 Olfr1263-201ENSMUST00000111507 1029 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Usp40Q8BWR4 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms