Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Spef2-203ENSMUST00000159368 1422 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col1a1P11087 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Myc-204ENSMUST00000160009 1765 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Rps6-201ENSMUST00000102814 878 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Tpm1-205ENSMUST00000113685 1208 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Gm15489-201ENSMUST00000132811 973 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Gm23432-201ENSMUST00000157181 131 ntBASIC12.76□□□□□ -0.37
Col1a1P11087 Rps18-206ENSMUST00000174609 527 ntTSL 2 BASIC12.76□□□□□ -0.37
Col1a1P11087 Gm38103-201ENSMUST00000191707 864 ntBASIC12.76□□□□□ -0.37
Col1a1P11087 Gm37885-202ENSMUST00000195868 685 ntTSL 3 BASIC12.76□□□□□ -0.37
Col1a1P11087 0610033M10Rik-202ENSMUST00000205236 1102 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Gm5650-201ENSMUST00000209641 598 ntBASIC12.76□□□□□ -0.37
Col1a1P11087 AC165092.1-201ENSMUST00000224018 486 ntBASIC12.76□□□□□ -0.37
Col1a1P11087 AC163646.3-202ENSMUST00000228685 691 ntBASIC12.76□□□□□ -0.37
Col1a1P11087 Galp-201ENSMUST00000037553 650 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Calm4-201ENSMUST00000042219 917 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col1a1P11087 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Col1a1P11087 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.76□□□□□ -0.37
Col1a1P11087 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Col1a1P11087 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col1a1P11087 Gm38048-201ENSMUST00000193778 2174 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm13120-201ENSMUST00000117343 1446 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm13104-201ENSMUST00000119651 1446 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.75□□□□□ -0.37
Col1a1P11087 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Myadm-202ENSMUST00000164553 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Col1a1P11087 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm22751-201ENSMUST00000102077 109 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Mir692-3-201ENSMUST00000102079 109 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Mir692-2-201ENSMUST00000102081 109 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Ighv1-49-201ENSMUST00000103519 294 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Col1a1P11087 Rpl7a-ps11-201ENSMUST00000118791 801 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm11544-201ENSMUST00000120215 382 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm13393-201ENSMUST00000141935 396 ntTSL 5 BASIC12.75□□□□□ -0.37
Col1a1P11087 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm18552-201ENSMUST00000187425 538 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm29200-201ENSMUST00000188118 1085 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm28179-201ENSMUST00000188365 613 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm28079-206ENSMUST00000188554 1170 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm9515-201ENSMUST00000200276 647 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm19798-201ENSMUST00000201502 457 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm18862-201ENSMUST00000204643 933 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm19090-201ENSMUST00000218187 774 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Tcl1b1-202ENSMUST00000222342 664 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
Col1a1P11087 Hesx1-202ENSMUST00000224331 983 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Col1a1P11087 AC154461.3-201ENSMUST00000224831 573 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 AC153153.1-201ENSMUST00000225803 793 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Mir194-2-201ENSMUST00000083648 86 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Gm16477-201ENSMUST00000085365 801 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Supt4a-201ENSMUST00000093955 706 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Gm17415-201ENSMUST00000096427 789 ntBASIC12.75□□□□□ -0.37
Col1a1P11087 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Col1a1P11087 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Col1a1P11087 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
Col1a1P11087 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col1a1P11087 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.75□□□□□ -0.37
Col1a1P11087 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Atf3-203ENSMUST00000195117 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Gm45663-201ENSMUST00000210429 1632 ntBASIC12.74□□□□□ -0.37
Col1a1P11087 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Col1a1P11087 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Col1a1P11087 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Stmn3-201ENSMUST00000103045 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Smim24-201ENSMUST00000105322 901 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col1a1P11087 Gm11235-201ENSMUST00000117763 333 ntBASIC12.74□□□□□ -0.37
Col1a1P11087 Gm16322-202ENSMUST00000141275 700 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms