Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Lrrc49-204ENSMUST00000114034 2779 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Nfya-202ENSMUST00000078800 3653 ntAPPRIS ALT1 TSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 6430562O15Rik-201ENSMUST00000180491 2488 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Extl1-201ENSMUST00000030643 4126 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm23270-201ENSMUST00000104055 131 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm26286-201ENSMUST00000104166 134 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm15370-201ENSMUST00000117158 253 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm13226-201ENSMUST00000117838 404 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm11573-201ENSMUST00000119956 394 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm17150-201ENSMUST00000165577 381 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm4310-201ENSMUST00000177847 889 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm3096-201ENSMUST00000185770 364 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm19187-201ENSMUST00000206781 892 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Tsix-202ENSMUST00000211291 3263 ntTSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Vma21-201ENSMUST00000114575 4290 ntTSL 2 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Akap2-202ENSMUST00000098064 7172 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 AC174797.1-201ENSMUST00000224339 1649 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Arfgef2-201ENSMUST00000099078 8770 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Zbtb34-202ENSMUST00000113158 6602 ntAPPRIS P1 TSL 3 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Fcamr-202ENSMUST00000112477 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Scamp1-203ENSMUST00000152555 1877 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 BC024978-201ENSMUST00000108379 7247 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Pou2f1-204ENSMUST00000111426 2671 ntAPPRIS ALT2 TSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Olfr1564-204ENSMUST00000213751 5418 ntAPPRIS ALT1 TSL 5 BASIC9.04□□□□□ -0.96
Hmgb3O54879 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Arhgap21-210ENSMUST00000154230 6972 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Tcn2-206ENSMUST00000109992 1945 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Pcdh9-204ENSMUST00000193901 6127 ntAPPRIS ALT1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Nedd4-201ENSMUST00000034740 5499 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Vmn1r26-203ENSMUST00000228070 4419 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Anapc15-213ENSMUST00000178851 2797 ntTSL 2 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Tbc1d24-214ENSMUST00000201960 4305 ntTSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Mdm1-203ENSMUST00000164077 2922 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 AY702103-202ENSMUST00000180996 5876 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 AI854703-202ENSMUST00000154570 3806 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.96
Hmgb3O54879 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gm27514-201ENSMUST00000183692 110 ntBASIC9.03□□□□□ -0.96
Hmgb3O54879 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gm45880-201ENSMUST00000213041 853 ntBASIC9.03□□□□□ -0.96
Hmgb3O54879 AC141438.2-201ENSMUST00000215068 271 ntBASIC9.03□□□□□ -0.96
Hmgb3O54879 AC132384.14-201ENSMUST00000219346 1147 ntBASIC9.03□□□□□ -0.96
Hmgb3O54879 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Scnn1a-201ENSMUST00000081440 3499 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Pogk-206ENSMUST00000169324 7034 ntAPPRIS ALT2 TSL 3 BASIC9.03□□□□□ -0.96
Hmgb3O54879 6430548M08Rik-203ENSMUST00000108950 3125 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 5730596B20Rik-201ENSMUST00000070587 3354 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Bfar-201ENSMUST00000023365 3003 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gosr2-201ENSMUST00000021329 3266 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Acbd5-212ENSMUST00000227663 4566 ntAPPRIS ALT2 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Gphn-201ENSMUST00000052472 3570 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Catsper1-201ENSMUST00000043380 2061 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms