Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Cux1P53564 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC16.69■□□□□ 0.26
Cux1P53564 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC16.69■□□□□ 0.26
Cux1P53564 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Gm45663-201ENSMUST00000210429 1632 ntBASIC16.69■□□□□ 0.26
Cux1P53564 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Cux1P53564 Olfr1060-ps1-201ENSMUST00000118335 943 ntBASIC16.69■□□□□ 0.26
Cux1P53564 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC16.69■□□□□ 0.26
Cux1P53564 Uba52-ps-201ENSMUST00000183770 379 ntBASIC16.69■□□□□ 0.26
Cux1P53564 Gm42687-201ENSMUST00000199075 164 ntBASIC16.69■□□□□ 0.26
Cux1P53564 Kcne3-206ENSMUST00000207995 439 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Cux1P53564 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC16.69■□□□□ 0.26
Cux1P53564 AC163646.3-202ENSMUST00000228685 691 ntBASIC16.69■□□□□ 0.26
Cux1P53564 Lcn3-201ENSMUST00000028304 684 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Fcrl1-206ENSMUST00000194786 1540 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cux1P53564 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC16.68■□□□□ 0.26
Cux1P53564 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC16.68■□□□□ 0.26
Cux1P53564 Gm15651-201ENSMUST00000159953 2507 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Gm6783-201ENSMUST00000120916 1437 ntBASIC16.68■□□□□ 0.26
Cux1P53564 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC16.68■□□□□ 0.26
Cux1P53564 Gm36211-201ENSMUST00000198171 1497 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Ighv1-12-201ENSMUST00000103500 294 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Cux1P53564 Adig-202ENSMUST00000109484 488 ntTSL 2 BASIC16.68■□□□□ 0.26
Cux1P53564 Gm15650-201ENSMUST00000135451 770 ntTSL 3 BASIC16.68■□□□□ 0.26
Cux1P53564 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC16.68■□□□□ 0.26
Cux1P53564 Tnnc1-202ENSMUST00000169169 721 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Vmn2r-ps13-201ENSMUST00000176920 606 ntBASIC16.68■□□□□ 0.26
Cux1P53564 Gm38007-201ENSMUST00000192187 313 ntBASIC16.68■□□□□ 0.26
Cux1P53564 4933430L12Rik-201ENSMUST00000206788 1194 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Gm18466-201ENSMUST00000209147 499 ntBASIC16.68■□□□□ 0.26
Cux1P53564 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Gm5148-202ENSMUST00000099128 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Dcstamp-201ENSMUST00000022913 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
Cux1P53564 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Cux1P53564 Hspa2-201ENSMUST00000080449 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Cux1P53564 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cux1P53564 Spef2-203ENSMUST00000159368 1422 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Cux1P53564 Cog3-203ENSMUST00000227473 4197 ntBASIC16.67■□□□□ 0.26
Cux1P53564 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Gm14699-201ENSMUST00000122340 228 ntBASIC16.67■□□□□ 0.26
Cux1P53564 Gm15839-201ENSMUST00000138684 612 ntTSL 3 BASIC16.67■□□□□ 0.26
Cux1P53564 Gm11670-201ENSMUST00000143435 511 ntTSL 2 BASIC16.67■□□□□ 0.26
Cux1P53564 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 C430039J16Rik-201ENSMUST00000181148 658 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Gm2716-201ENSMUST00000212350 643 ntBASIC16.67■□□□□ 0.26
Cux1P53564 AC165092.1-201ENSMUST00000224018 486 ntBASIC16.67■□□□□ 0.26
Cux1P53564 AC118639.1-202ENSMUST00000226957 653 ntBASIC16.67■□□□□ 0.26
Cux1P53564 Gm8615-201ENSMUST00000025307 771 ntBASIC16.67■□□□□ 0.26
Cux1P53564 Gm10617-201ENSMUST00000098368 1172 ntBASIC16.67■□□□□ 0.26
Cux1P53564 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Cux1P53564 Bgn-207ENSMUST00000169489 1574 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Cux1P53564 Rnf216-209ENSMUST00000200607 3704 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Gm32914-201ENSMUST00000203815 2228 ntBASIC16.67■□□□□ 0.26
Cux1P53564 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 A1cf-204ENSMUST00000224564 1432 ntBASIC16.67■□□□□ 0.26
Cux1P53564 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Cux1P53564 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Galntl5-202ENSMUST00000114965 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cux1P53564 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms