Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC12.81□□□□□ -0.36
Traf1P39428 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC12.81□□□□□ -0.36
Traf1P39428 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC12.81□□□□□ -0.36
Traf1P39428 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Gimap8-202ENSMUST00000203083 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Gm42499-201ENSMUST00000196193 1412 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC12.8□□□□□ -0.36
Traf1P39428 Gm33366-201ENSMUST00000195583 3827 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC12.8□□□□□ -0.36
Traf1P39428 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Gm18806-201ENSMUST00000207607 1775 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC12.8□□□□□ -0.36
Traf1P39428 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC12.8□□□□□ -0.36
Traf1P39428 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC12.8□□□□□ -0.36
Traf1P39428 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Traf1P39428 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Gm43912-201ENSMUST00000204352 538 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Gm3433-201ENSMUST00000210149 1058 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Gm18035-201ENSMUST00000211962 589 ntBASIC12.8□□□□□ -0.36
Traf1P39428 AC102847.1-202ENSMUST00000226313 1245 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Capsl-202ENSMUST00000226688 739 ntBASIC12.8□□□□□ -0.36
Traf1P39428 AC154589.2-201ENSMUST00000228847 251 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Tmem130-201ENSMUST00000061446 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Traf1P39428 Gm44663-201ENSMUST00000206898 3150 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Traf1P39428 AC109214.1-201ENSMUST00000219520 1372 ntBASIC12.8□□□□□ -0.36
Traf1P39428 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Traf1P39428 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Traf1P39428 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
Traf1P39428 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC12.79□□□□□ -0.36
Traf1P39428 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Gm25562-201ENSMUST00000104608 133 ntBASIC12.79□□□□□ -0.36
Traf1P39428 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Snord23-201ENSMUST00000116828 109 ntBASIC12.79□□□□□ -0.36
Traf1P39428 Gm12463-201ENSMUST00000118271 849 ntBASIC12.79□□□□□ -0.36
Traf1P39428 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC12.79□□□□□ -0.36
Traf1P39428 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC12.79□□□□□ -0.36
Traf1P39428 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Gm9372-201ENSMUST00000168454 430 ntBASIC12.79□□□□□ -0.36
Traf1P39428 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC12.79□□□□□ -0.36
Traf1P39428 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC12.79□□□□□ -0.36
Traf1P39428 Gm37365-201ENSMUST00000193109 409 ntBASIC12.79□□□□□ -0.36
Traf1P39428 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Traf1P39428 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Traf1P39428 CT573086.4-201ENSMUST00000226729 342 ntBASIC12.79□□□□□ -0.36
Traf1P39428 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Traf1P39428 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Traf1P39428 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Traf1P39428 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Traf1P39428 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC12.79□□□□□ -0.36
Traf1P39428 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Traf1P39428 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Traf1P39428 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Traf1P39428 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms