Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm37489-201ENSMUST00000191883 159 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm38117-201ENSMUST00000194653 939 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm9353-201ENSMUST00000200472 604 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 AC140451.2-201ENSMUST00000228030 664 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Smarcc2-203ENSMUST00000105235 4032 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Myo16-202ENSMUST00000207204 6719 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Pogz-204ENSMUST00000107269 5966 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Bcl2-202ENSMUST00000189999 2841 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Sema3e-201ENSMUST00000073957 6861 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Nup214-201ENSMUST00000065398 6605 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Sall4-203ENSMUST00000103074 3741 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Ccar2-201ENSMUST00000035612 3725 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm15943-201ENSMUST00000147638 3821 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Ptk2b-202ENSMUST00000089250 3903 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm38357-201ENSMUST00000195382 2464 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm6124-201ENSMUST00000188240 2580 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Casz1-201ENSMUST00000094464 4349 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Pcdh20-202ENSMUST00000192557 3362 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Trerf1-205ENSMUST00000190080 7045 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Frmd6-201ENSMUST00000057859 4662 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Idua-203ENSMUST00000119212 3022 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Peg13-201ENSMUST00000202826 4725 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Mbd5-203ENSMUST00000112754 5978 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Itgad-201ENSMUST00000033051 3965 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Ccdc167-203ENSMUST00000129091 2256 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Abca8a-202ENSMUST00000100287 5619 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Ankub1-202ENSMUST00000197088 1854 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm43482-201ENSMUST00000202797 1861 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Lrsam1-202ENSMUST00000113200 4030 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Cul2-206ENSMUST00000162301 3828 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm20495-201ENSMUST00000173902 235 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm45784-201ENSMUST00000188360 142 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm43962-201ENSMUST00000203898 190 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm30285-201ENSMUST00000214614 422 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm6653-201ENSMUST00000218063 1288 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm7940-201ENSMUST00000218195 769 ntBASIC9.05□□□□□ -0.96
Hmgb3O54879 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Gm11131-201ENSMUST00000113886 3122 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Dclk1-212ENSMUST00000199585 5196 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Zfp418-201ENSMUST00000051435 2725 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
Hmgb3O54879 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Arhgap45-202ENSMUST00000099501 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Trim66-202ENSMUST00000106739 9250 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Ank1-213ENSMUST00000141784 6566 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Hmgb3O54879 Kcnv1-201ENSMUST00000022967 4389 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Platr4-203ENSMUST00000199155 2161 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hmgb3O54879 Zfp423-203ENSMUST00000165770 4334 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gm28693-201ENSMUST00000189622 2638 ntBASIC9.04□□□□□ -0.96
Hmgb3O54879 Plekhg5-201ENSMUST00000084115 4113 ntAPPRIS ALT2 TSL 2 BASIC9.04□□□□□ -0.96
Hmgb3O54879 4933439C10Rik-203ENSMUST00000132226 3184 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hmgb3O54879 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms