Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Ccdc28bQ8CEG5 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Ccdc28bQ8CEG5 Zfp141-203ENSMUST00000174407 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Pigq-218ENSMUST00000208043 2987 ntAPPRIS P3 TSL 5 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Lhx9-202ENSMUST00000046870 3645 ntAPPRIS ALT1 TSL 5 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Sema4g-203ENSMUST00000179305 4290 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Gm38169-201ENSMUST00000191822 2539 ntBASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Morf4l2-201ENSMUST00000033797 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Rbbp6-202ENSMUST00000071590 5728 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Snord17-201ENSMUST00000104526 238 ntBASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Pomgnt1-204ENSMUST00000120083 2953 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Mrip-ps-201ENSMUST00000184613 940 ntBASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Gm3332-201ENSMUST00000189337 928 ntBASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Ighv5-7-201ENSMUST00000192302 244 ntBASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 D030055H07Rik-202ENSMUST00000150953 4325 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Camk2a-203ENSMUST00000102888 4970 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Exoc3l4-210ENSMUST00000223050 3418 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Ces2b-201ENSMUST00000059449 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Dmtn-203ENSMUST00000110984 4176 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Gm498-202ENSMUST00000152910 1507 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Ccdc28bQ8CEG5 Ighmbp2-201ENSMUST00000025751 3720 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Avil-203ENSMUST00000129173 2925 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Ccdc148-204ENSMUST00000226455 4612 ntAPPRIS ALT2 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Nedd1-201ENSMUST00000020163 3534 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Msrb3-201ENSMUST00000092143 3843 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm5525-201ENSMUST00000190438 1312 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Acot11-202ENSMUST00000102762 5689 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm43972-201ENSMUST00000181398 1467 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 AC131068.2-201ENSMUST00000226175 1453 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Amt-201ENSMUST00000035230 2082 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm13910-201ENSMUST00000121752 1428 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm15276-201ENSMUST00000145953 498 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm17420-201ENSMUST00000164753 153 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Dysf-211ENSMUST00000168387 6501 ntTSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm25700-201ENSMUST00000177693 110 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Tada2a-201ENSMUST00000018795 2151 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm6334-201ENSMUST00000207083 228 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm6108-201ENSMUST00000208365 367 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm13097-201ENSMUST00000210722 397 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 AC166349.1-201ENSMUST00000220866 695 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Nuggc-201ENSMUST00000079469 2567 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gosr2-201ENSMUST00000021329 3266 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Mre11a-201ENSMUST00000034405 3286 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm9200-201ENSMUST00000118513 1354 ntBASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 D630003M21Rik-202ENSMUST00000103121 4521 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm29125-201ENSMUST00000187121 3220 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Gm35715-201ENSMUST00000197421 2054 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Slc7a14-202ENSMUST00000108245 3080 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Katnal2-205ENSMUST00000126153 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Pip5k1a-201ENSMUST00000005768 3480 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Ccdc28bQ8CEG5 Cd160-203ENSMUST00000165991 2458 ntAPPRIS ALT2 TSL 3 BASIC10.87□□□□□ -0.67
Ccdc28bQ8CEG5 Gm10634-202ENSMUST00000188891 2464 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ccdc28bQ8CEG5 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC10.87□□□□□ -0.67
Ccdc28bQ8CEG5 Gm17980-201ENSMUST00000217977 2349 ntBASIC10.87□□□□□ -0.67
Ccdc28bQ8CEG5 Kif3a-202ENSMUST00000118353 2178 ntTSL 5 BASIC10.87□□□□□ -0.67
Ccdc28bQ8CEG5 Gcc1-201ENSMUST00000064377 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ccdc28bQ8CEG5 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ccdc28bQ8CEG5 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms