Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Gm7964-201ENSMUST00000051522 1378 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Traf1P39428 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Gm38187-201ENSMUST00000195609 4709 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Gm12179-201ENSMUST00000118344 1272 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Traf1P39428 Gm11952-201ENSMUST00000121172 821 ntBASIC12.82□□□□□ -0.36
Traf1P39428 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC12.82□□□□□ -0.36
Traf1P39428 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Traf1P39428 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Traf1P39428 Gm19013-201ENSMUST00000183895 1222 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Gm19014-201ENSMUST00000184828 1189 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Gm18463-201ENSMUST00000207258 474 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Gm18460-201ENSMUST00000208088 464 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC12.82□□□□□ -0.36
Traf1P39428 Gm6390-201ENSMUST00000215034 589 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Gm26670-202ENSMUST00000226862 340 ntBASIC12.82□□□□□ -0.36
Traf1P39428 AC130477.1-201ENSMUST00000226982 420 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Gm10254-201ENSMUST00000052888 867 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Tln2-205ENSMUST00000215267 4999 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Traf1P39428 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Traf1P39428 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Gm38292-201ENSMUST00000192646 3045 ntBASIC12.82□□□□□ -0.36
Traf1P39428 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Traf1P39428 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Traf1P39428 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Rangap1-201ENSMUST00000052374 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 AC167565.1-201ENSMUST00000226980 1833 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Traf1P39428 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Traf1P39428 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Snord17-201ENSMUST00000104526 238 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Traf1P39428 Gm11801-201ENSMUST00000117807 746 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm12816-201ENSMUST00000118069 1212 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm12663-201ENSMUST00000118481 958 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm13019-201ENSMUST00000120000 276 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm12783-201ENSMUST00000121425 397 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm11980-201ENSMUST00000121445 986 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm14165-201ENSMUST00000121456 952 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC12.81□□□□□ -0.36
Traf1P39428 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC12.81□□□□□ -0.36
Traf1P39428 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Gm8723-201ENSMUST00000166076 820 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm8701-201ENSMUST00000169259 874 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Traf1P39428 Gm43692-201ENSMUST00000198236 1062 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Traf1P39428 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Traf1P39428 Gm9111-201ENSMUST00000219394 709 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Mir483-201ENSMUST00000093631 73 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 Gm17244-201ENSMUST00000192482 3416 ntBASIC12.81□□□□□ -0.36
Traf1P39428 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Traf1P39428 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Traf1P39428 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 92.2 ms