Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Gm8285-201ENSMUST00000208293 759 ntBASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Gm25580-201ENSMUST00000083409 327 ntBASIC12.36□□□□□ -0.43
Usp49Q6P9L4 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Gm6768-201ENSMUST00000022467 1878 ntBASIC12.36□□□□□ -0.43
Usp49Q6P9L4 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm10548-201ENSMUST00000097631 2629 ntBASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Catsper1-201ENSMUST00000043380 2061 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Lin54-209ENSMUST00000152387 2760 ntTSL 5 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm12663-201ENSMUST00000118481 958 ntBASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm12136-201ENSMUST00000120460 1209 ntBASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm25554-201ENSMUST00000158075 113 ntBASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm18561-201ENSMUST00000206027 804 ntBASIC12.35□□□□□ -0.43
Usp49Q6P9L4 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm10179-201ENSMUST00000086233 688 ntBASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Optc-205ENSMUST00000153617 1615 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Gm6024-201ENSMUST00000117850 1558 ntBASIC12.35□□□□□ -0.43
Usp49Q6P9L4 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm13888-201ENSMUST00000119148 422 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm11246-201ENSMUST00000120880 345 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm37301-201ENSMUST00000195412 568 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm45219-201ENSMUST00000205602 465 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm9463-201ENSMUST00000206707 601 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Id2-203ENSMUST00000222667 958 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm42602-201ENSMUST00000200288 3224 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gys1-206ENSMUST00000211150 2681 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Gm44999-201ENSMUST00000207456 1493 ntBASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp49Q6P9L4 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Usp49Q6P9L4 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Usp49Q6P9L4 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC12.33□□□□□ -0.44
Usp49Q6P9L4 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Usp49Q6P9L4 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms