Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm42816-201ENSMUST00000198433 325 ntBASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 AC154589.2-201ENSMUST00000228847 251 ntBASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC11.84□□□□□ -0.51
Upf3bQ3ULL6 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Upf3bQ3ULL6 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC11.83□□□□□ -0.51
Upf3bQ3ULL6 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Upf3bQ3ULL6 Gm5739-201ENSMUST00000208601 1703 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm14592-201ENSMUST00000117201 560 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm26134-201ENSMUST00000178484 110 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm44158-201ENSMUST00000203881 505 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 AC136376.2-201ENSMUST00000228819 490 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm14005-209ENSMUST00000224993 1832 ntBASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Sec24d-201ENSMUST00000047923 3903 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Upf3bQ3ULL6 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm12274-201ENSMUST00000120062 385 ntBASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm25343-201ENSMUST00000157460 107 ntBASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm8531-201ENSMUST00000188319 893 ntBASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 Gm44551-201ENSMUST00000208804 171 ntBASIC11.82□□□□□ -0.52
Upf3bQ3ULL6 AC134248.1-201ENSMUST00000216113 1176 ntBASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms