Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Cux1P53564 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Cux1P53564 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Cux1P53564 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 AC124732.3-201ENSMUST00000221835 1765 ntBASIC16.75■□□□□ 0.27
Cux1P53564 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Gm12377-201ENSMUST00000118656 252 ntBASIC16.75■□□□□ 0.27
Cux1P53564 Gm6276-201ENSMUST00000120159 579 ntBASIC16.75■□□□□ 0.27
Cux1P53564 Gm16480-201ENSMUST00000120439 832 ntBASIC16.75■□□□□ 0.27
Cux1P53564 Gm18443-201ENSMUST00000185358 556 ntBASIC16.75■□□□□ 0.27
Cux1P53564 Gm18164-201ENSMUST00000213769 927 ntBASIC16.75■□□□□ 0.27
Cux1P53564 Gm18166-201ENSMUST00000215557 927 ntBASIC16.75■□□□□ 0.27
Cux1P53564 Gm32939-201ENSMUST00000222336 843 ntTSL 3 BASIC16.75■□□□□ 0.27
Cux1P53564 Olfr47-201ENSMUST00000078057 1059 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Cux1P53564 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Cux1P53564 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cux1P53564 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Cux1P53564 1700022A22Rik-202ENSMUST00000187130 1458 ntTSL 5 BASIC16.75■□□□□ 0.27
Cux1P53564 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Mrpl24-202ENSMUST00000119968 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Cux1P53564 Gm6713-201ENSMUST00000216137 1446 ntBASIC16.74■□□□□ 0.27
Cux1P53564 AC131081.1-201ENSMUST00000219535 1736 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Gm22751-201ENSMUST00000102077 109 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Mir692-3-201ENSMUST00000102079 109 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Mir692-2-201ENSMUST00000102081 109 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Stmn3-201ENSMUST00000103045 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Olfr1372-ps1-201ENSMUST00000121007 934 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Gm28391-201ENSMUST00000185202 379 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Gm29528-201ENSMUST00000186699 379 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Gm29526-201ENSMUST00000187217 379 ntBASIC16.74■□□□□ 0.27
Cux1P53564 6030460B20Rik-201ENSMUST00000191764 1058 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Gm43117-201ENSMUST00000198531 379 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Gm6426-201ENSMUST00000209048 854 ntBASIC16.74■□□□□ 0.27
Cux1P53564 AC113291.2-201ENSMUST00000215490 1205 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Ndufc1-201ENSMUST00000038108 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Gm29101-201ENSMUST00000188329 1471 ntBASIC16.74■□□□□ 0.27
Cux1P53564 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Prl8a1-202ENSMUST00000095926 1682 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC16.74■□□□□ 0.27
Cux1P53564 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC16.74■□□□□ 0.27
Cux1P53564 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Cux1P53564 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cux1P53564 AC154640.1-203ENSMUST00000228316 1618 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Cux1P53564 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Cux1P53564 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Gm22582-201ENSMUST00000102283 94 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Scgb1b29-201ENSMUST00000108094 282 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Gm5148-203ENSMUST00000108105 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Gm7861-201ENSMUST00000110749 506 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Gm7849-201ENSMUST00000110752 488 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Psme2-201ENSMUST00000111378 795 ntTSL 5 BASIC16.73■□□□□ 0.27
Cux1P53564 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Rps23-ps1-201ENSMUST00000116115 425 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Gm12470-201ENSMUST00000117239 1049 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Pex13-ps-201ENSMUST00000118184 1157 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Rps23-ps2-201ENSMUST00000146939 432 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Gm15658-201ENSMUST00000148293 574 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Gm44304-201ENSMUST00000200509 145 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Gm19605-205ENSMUST00000221712 677 ntTSL 3 BASIC16.73■□□□□ 0.27
Cux1P53564 AC102327.1-201ENSMUST00000226389 742 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Ankrd45-201ENSMUST00000052245 849 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
Cux1P53564 Gm8730-201ENSMUST00000076373 954 ntBASIC16.73■□□□□ 0.27
Cux1P53564 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC16.73■□□□□ 0.27
Cux1P53564 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Cux1P53564 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC16.73■□□□□ 0.27
Cux1P53564 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC16.73■□□□□ 0.27
Cux1P53564 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cux1P53564 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 Klra9-202ENSMUST00000112032 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cux1P53564 1700095J12Rik-201ENSMUST00000124620 737 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms