Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Traf1P39428 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Gm43152-201ENSMUST00000202495 1638 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Gm13135-201ENSMUST00000117628 3121 ntBASIC12.84□□□□□ -0.35
Traf1P39428 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Traf1P39428 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Gm4982-201ENSMUST00000160440 1098 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Gm24809-201ENSMUST00000175318 271 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC12.84□□□□□ -0.35
Traf1P39428 AC124457.1-201ENSMUST00000198845 120 ntBASIC12.84□□□□□ -0.35
Traf1P39428 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC12.84□□□□□ -0.35
Traf1P39428 Gm44814-201ENSMUST00000207018 434 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 AC115304.2-201ENSMUST00000226399 332 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Gm4604-201ENSMUST00000025040 390 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Traf1P39428 Gm25580-201ENSMUST00000083409 327 ntBASIC12.84□□□□□ -0.35
Traf1P39428 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC12.84□□□□□ -0.35
Traf1P39428 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC12.84□□□□□ -0.35
Traf1P39428 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.84□□□□□ -0.35
Traf1P39428 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Traf1P39428 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Traf1P39428 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Traf1P39428 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Traf1P39428 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Traf1P39428 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Traf1P39428 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Traf1P39428 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.83□□□□□ -0.36
Traf1P39428 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC12.83□□□□□ -0.36
Traf1P39428 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC12.83□□□□□ -0.36
Traf1P39428 Gm12986-201ENSMUST00000119037 967 ntBASIC12.83□□□□□ -0.36
Traf1P39428 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Gm5529-201ENSMUST00000165691 891 ntBASIC12.83□□□□□ -0.36
Traf1P39428 Snord55-201ENSMUST00000174939 79 ntBASIC12.83□□□□□ -0.36
Traf1P39428 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Traf1P39428 Gm38324-201ENSMUST00000194390 411 ntTSL 3 BASIC12.83□□□□□ -0.36
Traf1P39428 Gm44216-201ENSMUST00000203942 157 ntBASIC12.83□□□□□ -0.36
Traf1P39428 Gm7525-201ENSMUST00000219425 454 ntBASIC12.83□□□□□ -0.36
Traf1P39428 Gm7959-201ENSMUST00000221823 1078 ntBASIC12.83□□□□□ -0.36
Traf1P39428 AC154361.2-201ENSMUST00000224747 943 ntBASIC12.83□□□□□ -0.36
Traf1P39428 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Traf1P39428 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Traf1P39428 Gm7589-201ENSMUST00000085631 534 ntBASIC12.83□□□□□ -0.36
Traf1P39428 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Traf1P39428 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Traf1P39428 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Traf1P39428 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Olfr1156-202ENSMUST00000216191 3300 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Traf1P39428 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Traf1P39428 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Traf1P39428 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms