Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm45719-201ENSMUST00000207954 1662 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm29101-201ENSMUST00000188329 1471 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Col1a1P11087 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm9-201ENSMUST00000101636 817 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Gm12950-201ENSMUST00000121683 417 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm5873-201ENSMUST00000177157 1066 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm37009-201ENSMUST00000193297 361 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 AC153379.1-201ENSMUST00000218174 485 ntTSL 3 BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 AC154433.1-201ENSMUST00000224401 1183 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm8420-201ENSMUST00000097103 598 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Col1a1P11087 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
Col1a1P11087 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.83□□□□□ -0.36
Col1a1P11087 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Col1a1P11087 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col1a1P11087 Dmtf1-201ENSMUST00000071921 3806 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 5031425E22Rik-202ENSMUST00000185943 1477 ntTSL 5 BASIC12.82□□□□□ -0.36
Col1a1P11087 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Gm15626-201ENSMUST00000117478 868 ntBASIC12.82□□□□□ -0.36
Col1a1P11087 Gm6425-201ENSMUST00000136332 790 ntBASIC12.82□□□□□ -0.36
Col1a1P11087 Gm15341-201ENSMUST00000137315 592 ntTSL 3 BASIC12.82□□□□□ -0.36
Col1a1P11087 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC12.82□□□□□ -0.36
Col1a1P11087 Gm42710-201ENSMUST00000200608 985 ntBASIC12.82□□□□□ -0.36
Col1a1P11087 Gm8615-201ENSMUST00000025307 771 ntBASIC12.82□□□□□ -0.36
Col1a1P11087 Stpg4-201ENSMUST00000040609 847 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Fthl17e-201ENSMUST00000096509 841 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col1a1P11087 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col1a1P11087 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 AC122811.1-201ENSMUST00000222257 2921 ntBASIC12.82□□□□□ -0.36
Col1a1P11087 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
Col1a1P11087 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Col1a1P11087 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col1a1P11087 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col1a1P11087 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC12.82□□□□□ -0.36
Col1a1P11087 Amd-ps3-201ENSMUST00000072796 1496 ntBASIC12.81□□□□□ -0.36
Col1a1P11087 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Rnf216-209ENSMUST00000200607 3704 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Col1a1P11087 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC12.81□□□□□ -0.36
Col1a1P11087 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col1a1P11087 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Ighv1-62-3-201ENSMUST00000103532 405 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col1a1P11087 Mir291b-201ENSMUST00000104838 79 ntBASIC12.81□□□□□ -0.36
Col1a1P11087 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Col1a1P11087 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC12.81□□□□□ -0.36
Col1a1P11087 Gm8876-201ENSMUST00000120768 1122 ntBASIC12.81□□□□□ -0.36
Col1a1P11087 Rptoros-201ENSMUST00000127450 1174 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Gm11521-201ENSMUST00000143302 329 ntTSL 3 BASIC12.81□□□□□ -0.36
Col1a1P11087 Eif5a-212ENSMUST00000153652 840 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Gm12847-201ENSMUST00000156219 413 ntTSL 5 BASIC12.81□□□□□ -0.36
Col1a1P11087 Gm17799-201ENSMUST00000183270 667 ntBASIC12.81□□□□□ -0.36
Col1a1P11087 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Gm2474-201ENSMUST00000195162 559 ntBASIC12.81□□□□□ -0.36
Col1a1P11087 Gm43777-201ENSMUST00000197269 376 ntTSL 3 BASIC12.81□□□□□ -0.36
Col1a1P11087 Gm5302-201ENSMUST00000202130 796 ntBASIC12.81□□□□□ -0.36
Col1a1P11087 Gm33570-201ENSMUST00000207608 1254 ntTSL 5 BASIC12.81□□□□□ -0.36
Col1a1P11087 AC122824.1-201ENSMUST00000221705 828 ntTSL 3 BASIC12.81□□□□□ -0.36
Col1a1P11087 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Col1a1P11087 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col1a1P11087 AC167565.1-201ENSMUST00000226980 1833 ntBASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms