Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Smc1aQ9CU62 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Smc1aQ9CU62 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Smc1aQ9CU62 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Smc1aQ9CU62 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC12.44□□□□□ -0.42
Smc1aQ9CU62 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Dock6-207ENSMUST00000217336 6880 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Eif4g2-206ENSMUST00000161051 3548 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm14942-201ENSMUST00000119642 336 ntBASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm13937-201ENSMUST00000121000 988 ntBASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm6771-201ENSMUST00000182716 1001 ntBASIC12.43□□□□□ -0.42
Smc1aQ9CU62 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm37458-201ENSMUST00000194055 410 ntBASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Igkv2-116-201ENSMUST00000199327 362 ntBASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Gm5703-201ENSMUST00000186658 3973 ntBASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Smc1aQ9CU62 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 CT868720.1-201ENSMUST00000223069 2544 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm16166-201ENSMUST00000118291 787 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm13668-201ENSMUST00000119237 1001 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm11783-201ENSMUST00000119549 885 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm7150-201ENSMUST00000122032 981 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm25951-201ENSMUST00000175330 64 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm38151-201ENSMUST00000195085 289 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm5298-201ENSMUST00000201122 892 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 AC154184.3-201ENSMUST00000225620 1090 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Smc1aQ9CU62 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms