Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Rfx1P48377 Arpp21-217ENSMUST00000161412 1687 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
Rfx1P48377 Ticam1-201ENSMUST00000058136 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC13.19□□□□□ -0.3
Rfx1P48377 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Rfx1P48377 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC13.19□□□□□ -0.3
Rfx1P48377 Gm8111-201ENSMUST00000117659 987 ntBASIC13.19□□□□□ -0.3
Rfx1P48377 Gm12196-201ENSMUST00000120954 262 ntBASIC13.19□□□□□ -0.3
Rfx1P48377 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC13.19□□□□□ -0.3
Rfx1P48377 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC13.19□□□□□ -0.3
Rfx1P48377 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Rfx1P48377 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC13.19□□□□□ -0.3
Rfx1P48377 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC13.19□□□□□ -0.3
Rfx1P48377 Gm43822-201ENSMUST00000200285 476 ntBASIC13.19□□□□□ -0.3
Rfx1P48377 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC13.19□□□□□ -0.3
Rfx1P48377 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC13.19□□□□□ -0.3
Rfx1P48377 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Tnfsf13b-203ENSMUST00000207792 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Rfx1P48377 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Rfx1P48377 Srpx2-201ENSMUST00000033606 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Lrfn5-202ENSMUST00000119481 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Rfx1P48377 Trim36-202ENSMUST00000167364 4543 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx1P48377 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Zfp418-201ENSMUST00000051435 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx1P48377 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Gm14724-201ENSMUST00000118400 537 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Gm14723-201ENSMUST00000118686 215 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx1P48377 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC13.18□□□□□ -0.3
Rfx1P48377 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx1P48377 Gm8100-201ENSMUST00000182906 988 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Gm5302-201ENSMUST00000202130 796 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 AC118639.2-201ENSMUST00000226289 223 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Rfx1P48377 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC13.18□□□□□ -0.3
Rfx1P48377 Gm10288-201ENSMUST00000084614 537 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Gm3765-201ENSMUST00000130985 1447 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Ybey-201ENSMUST00000049185 4522 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Zfyve1-201ENSMUST00000048319 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Marveld2-201ENSMUST00000022137 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Dhx40-201ENSMUST00000018569 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 Clec12b-201ENSMUST00000032261 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Rfx1P48377 AC140462.2-201ENSMUST00000225718 2433 ntBASIC13.18□□□□□ -0.3
Rfx1P48377 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Ighmbp2-201ENSMUST00000025751 3720 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Rnf121-203ENSMUST00000106953 2545 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC13.17□□□□□ -0.3
Rfx1P48377 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Lrrc49-204ENSMUST00000114034 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Nampt-201ENSMUST00000020886 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Rfx1P48377 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Rfx1P48377 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Mir6420-201ENSMUST00000185032 102 ntBASIC13.17□□□□□ -0.3
Rfx1P48377 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Rfx1P48377 Gm2965-201ENSMUST00000198365 343 ntBASIC13.17□□□□□ -0.3
Rfx1P48377 Gm43630-201ENSMUST00000201550 776 ntBASIC13.17□□□□□ -0.3
Rfx1P48377 Pigq-218ENSMUST00000208043 2987 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Rfx1P48377 Gm19208-201ENSMUST00000213861 912 ntBASIC13.17□□□□□ -0.3
Rfx1P48377 Gm6082-201ENSMUST00000215204 454 ntBASIC13.17□□□□□ -0.3
Rfx1P48377 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Gm9899-201ENSMUST00000065519 555 ntBASIC13.17□□□□□ -0.3
Rfx1P48377 Ampd2-203ENSMUST00000102638 3650 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Morf4l2-201ENSMUST00000033797 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Rfx1P48377 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms