Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm6655-201ENSMUST00000201932 1309 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm18642-201ENSMUST00000206642 1400 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Clip1-203ENSMUST00000111561 5883 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm25766-201ENSMUST00000104101 131 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm25063-201ENSMUST00000104666 94 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm3671-201ENSMUST00000182463 1007 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm19166-201ENSMUST00000196041 1063 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm3017-201ENSMUST00000203603 1126 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm45120-201ENSMUST00000208880 408 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm23680-201ENSMUST00000083162 164 ntBASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Nhsl1-201ENSMUST00000037341 7321 ntAPPRIS P3 TSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gria1-201ENSMUST00000036315 5546 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Gm32856-201ENSMUST00000212145 3767 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Cdc40Q9DC48 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Olfr1219-204ENSMUST00000215225 5865 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm4993-201ENSMUST00000118719 1174 ntBASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Selenot-ps-201ENSMUST00000119098 593 ntBASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm22846-201ENSMUST00000157706 270 ntBASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Adgrv1-214ENSMUST00000224088 1492 ntBASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm21358-201ENSMUST00000191645 1659 ntBASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm34923-201ENSMUST00000222673 5043 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Megf10-201ENSMUST00000075770 7514 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Gm3765-201ENSMUST00000130985 1447 ntBASIC10.33□□□□□ -0.76
Cdc40Q9DC48 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC10.33□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms