Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm36957-201ENSMUST00000192982 2824 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm17213-201ENSMUST00000165161 1360 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm38376-201ENSMUST00000195493 2253 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm12194-201ENSMUST00000117756 1012 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm8876-201ENSMUST00000120768 1122 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm4753-201ENSMUST00000188327 1255 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm43667-201ENSMUST00000198616 1095 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm18556-201ENSMUST00000219748 1031 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Mirlet7i-201ENSMUST00000083472 85 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 AC122273.1-201ENSMUST00000213634 2327 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Gm33366-201ENSMUST00000195583 3827 ntBASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Upf3bQ3ULL6 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm45532-201ENSMUST00000210342 3620 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Idua-203ENSMUST00000119212 3022 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm13284-201ENSMUST00000121020 547 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm8436-201ENSMUST00000210152 1080 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm5749-201ENSMUST00000210673 1090 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Saa-ps-201ENSMUST00000211148 320 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm30671-201ENSMUST00000214898 318 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm9111-201ENSMUST00000219394 709 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 AC122346.3-201ENSMUST00000223983 306 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 AC156501.1-201ENSMUST00000228219 270 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 AC135114.1-201ENSMUST00000228682 270 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Gm5308-201ENSMUST00000196752 1354 ntBASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Ptpro-201ENSMUST00000077115 5049 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Upf3bQ3ULL6 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms